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Job 85100 [SSGCID - MygeA.00042.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Elongation factor Tu (MG_451) - BATCH:85100

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDEIDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGVPKMVVFLNKCDIASDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAKIHDLIKAVDEWIPTPTREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVGQEVEIVGLKPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVERKEVERGQVLAKPGSIKPHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSIALAENTEMVLPGDNASITVELIAPIACEKGSKFSIREGGRTVGAGTVTEVLE
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)
XXXXXX-X-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred
-----------EEEEEEE------HHHHHHHHHHHHHHH----EEEHHHHH--HHHHH---EEEEEEEEEE---EEEEEEE----HHHHHHHH--HHH--EEEEEEE---------HHHHHHHHHH----EEEEEE-------HHHHHHHHHHHHHHHHH-------EEEEE--HHH----------EE---HHHHH-------------EEEEHHHEE------EEEEEEEE--EEEE--EEEEEEE----EEEEEEEEE------EEE----EEEEEE---HHH---EEEEE---------EEEEEEEEEE---------------EEEEE------EEEE------EE----EEEEEEEE---EEEEE--EEEEEE---EEEEEEEEEE--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    31	    0.188
  max. Y     3	    0.192
  max. S    42	    0.369
  mean S     1-2    0.306
       D     1-2    0.236    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.236 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-394     alignment     4v5pAZ_201     1-385   0.5886   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.03%)1E-1441-3941-394518100394ref|NP_073121.1|elongation factor Tu [Mycoplasma genitalium G37] ref|YP_0065...
2104Mycoplasma pneumoniae1 (0.03%)1E-1371-3931-39349692393emb|CAA39292.1|elongation factor [Mycoplasma pneumoniae]
1048830Mycoplasma iowae 6951 (0.03%)1E-1471-3941-39452877394ref|WP_004025345.1|elongation factor Tu [Mycoplasma iowae] gb|EGZ30937.1| elong...
521098Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 4461 (0.03%)1E-1561-3941-39555875395ref|YP_003186106.1|translation elongation factor Tu [Alicyclobacillus acidocald...
1048834Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-11 (0.03%)1E-1561-3941-39555875395ref|YP_005519447.1|translation elongation factor Tu [Alicyclobacillus acidocald...
0UNIDENTIFIED146 (3.65%)1E-1531-3921-39254873392ref|WP_022134906.1|elongation factor Tu [Clostridium sp. CAG:594] emb|CDA80814....
1235796Firmicutes bacterium M10-21 (0.03%)1E-1491-3931-39353473393ref|WP_016320216.1|elongation factor Tu [Firmicutes bacterium M10-2] gb|EOS5947...
545696Holdemania filiformis DSM 120421 (0.03%)1E-1491-3941-39453373394ref|WP_006058547.1|elongation factor Tu [Holdemania filiformis] gb|EEF68447.1| ...
1151410Clostridium difficile P281 (0.03%)1E-1481-3941-39453273394ref|WP_002607408.1|elongation factor Tu [Firmicutes] gb|EFR39614.1| translation...
471223Geobacillus sp. WCH701 (0.03%)1E-1481-3941-39553173395ref|YP_002948315.1|elongation factor Tu [Geobacillus sp. WCH70] ref|WP_01274888...
81408Geobacillus caldoxylosilyticus1 (0.03%)1E-1481-3941-39553073395ref|WP_017434018.1|elongation factor Tu [Geobacillus caldoxylosilyticus]
301148Caldibacillus debilis1 (0.03%)1E-1471-3941-39552973395ref|WP_020155389.1|elongation factor Tu [Caldibacillus debilis]
1136178Geobacillus thermoglucosidans TNO-09.0201 (0.03%)1E-1471-3941-39552973395ref|YP_003987575.1|translation elongation factor Tu [Geobacillus sp. Y4.1MC1] r...
1095383Geobacillus sp. A81 (0.03%)1E-1471-3941-39552873395ref|YP_145957.1|elongation factor Tu [Geobacillus kaustophilus HTA426] ref|Y...
171243Geobacillus anatolicus1 (0.03%)1E-1471-3941-39552773395gb|ABH03024.1|elongation factor Tu [Geobacillus anatolicus]
1315967Anoxybacillus flavithermus NBRC 1095941 (0.03%)1E-1471-3941-39552773395ref|YP_002314472.1|elongation factor Tu [Anoxybacillus flavithermus WK1] ref|WP...
1422Geobacillus stearothermophilus1 (0.03%)1E-1471-3941-39552773395sp|O50306.2|EFTU_BACSTRecName: Full=Elongation factor Tu; Short=EF-Tu emb|CAA03976...
428127Eubacterium dolichum DSM 39911 (0.03%)1E-1451-3931-39352173393ref|WP_004798278.1|elongation factor Tu [[Eubacterium] dolichum] gb|EDP12010.1|...
1129368Spiroplasma melliferum IPMB4A1 (0.03%)1E-1451-3941-39652173396ref|WP_004028071.1|elongation factor Tu [Spiroplasma melliferum] gb|EHJ90899.1|...
562970Kyrpidia tusciae DSM 29121 (0.03%)1E-1451-3941-39652173396ref|YP_003588073.1|translation elongation factor Tu [Kyrpidia tusciae DSM 2912]...






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