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Job 85102 [SSGCID - MygeA.00066.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] DNA-directed RNA polymerase subunit alpha (MG_177) - BATCH:85100

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MEKFLKYEIKVNNNQPTNTNPNYGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIAISGVKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLLFEDGEMIEPPLERWPVLKVTAEKKGAVYAKDLECPAGFEVINKDLYLFSLQKDMKLTVSVYVKQGRGFTSFLENRELINSLGIIATDANFSPVLHCGYEVQEVKTSKQKLTDHLTFKIATNGAIKAVDAFAMAAKILIEHLNPIVSVNESIKNLTIIQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLTDIREIRNLGKKSEREIIKKVQELGLKFRS
tmhmm (0) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%) 
-----------XXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (4%) 
X----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX-----------------------------------------------------------------X
psipred 
--------EEEEEEEE------EEEEEEEE-----HHHHHHHHHHHHHH---EEEEEEEEE------------HHHHHHHHHHHHH--EEE-------------------EEEEEEEE---EEEEE-------EEEEE--EEEEEE----EEEEEEEEE---EEE-------------EEE-------EEEEEEEEEE-------HHHHEEEEEEE-----HHHHHHHHHHHHHHHHHHHHHH-----------------HHHH---HHHH----HHHHHHHHHH--EEHHHHH---HHHHH------HHHHHHHHHHHHH-------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    61	    0.133
  max. Y    61	    0.183
  max. S    53	    0.372
  mean S     1-60   0.131
       D     1-60   0.162    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.162 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-328     alignment     4kn7A_201     1-323   0.6809   TRANSFERASE/ANTIBIOTIC


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
2133Spiroplasma citri2 (0.06%)7E-941-3271-31535043327emb|CAK98592.1|probable dna-directed rna polymerase alpha chain protein [Sp...
273035Spiroplasma kunkelii CR2-3x1 (0.03%)2E-931-3271-31534843327gb|AAP58916.1|DNA-directed RNA polymerase alpha subunit [Spiroplasma kunke...
626095Ureaplasma urealyticum serovar 8 str. ATCC 276181 (0.03%)4E-881-3271-32533142327ref|YP_002284656.1|DNA-directed RNA polymerase subunit alpha [Ureaplasma urealy...
374675Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)2 (0.06%)7E-264-933-911244190gb|EAT14134.1|DNA-directed RNA polymerase alpha chain [Candidatus Sulcia m...
596315Peptostreptococcus stomatis DSM 176781 (0.03%)1E-1171-3271-31142740327ref|WP_007791400.1|DNA-directed RNA polymerase subunit alpha [Peptostreptococcu...
428126Clostridium spiroforme DSM 15521 (0.03%)1E-1161-3271-31142440327ref|WP_004610096.1|DNA-directed RNA polymerase subunit alpha [[Clostridium] spi...
1033810Haloplasma contractile SSD-17B1 (0.03%)1E-1161-3271-32242440327ref|WP_008825062.1|DNA-directed RNA polymerase subunit alpha [Haloplasma contra...
862259Mycoplasma mycoides subsp. capri LC str. 950101 (0.03%)1E-911-3271-31534240328ref|YP_004400377.1|DNA directed RNA polymerase subunit alpha [Mycoplasma mycoid...
340047Mycoplasma capricolum subsp. capricolum ATCC 273431 (0.03%)3E-891-3271-31533540328emb|CAA83722.1|DNA-directed RNA Polymerase (alpha) [Mycoplasma capricolum s...
796606Bacillus methanolicus MGA31 (0.03%)1E-1331-3271-31148239327ref|WP_003348571.1|DNA-directed RNA polymerase subunit alpha [Bacillus methanol...
1118154Brevibacillus laterosporus GI-91 (0.03%)1E-1331-3281-31248139328ref|WP_003333761.1|DNA-directed RNA polymerase subunit alpha [Brevibacillus lat...
1085388Bacillus cereus BAG3O-11 (0.03%)1E-1331-3271-31148039327ref|WP_000569644.1|DNA-directed RNA polymerase subunit alpha [Bacillus cereus] ...
1220585Bacillus weihenstephanensis NBRC 101238 = DSM 118211 (0.03%)1E-1321-3271-31147939327ref|YP_001643029.1|DNA-directed RNA polymerase subunit alpha [Bacillus weihenst...
1202533Bacillus nealsonii AAU11 (0.03%)1E-1321-3271-31147939327ref|WP_016204581.1|DNA-directed RNA polymerase subunit alpha [Bacillus nealsoni...
1227358Bacillus weihenstephanensis FSL H7-6871 (0.03%)1E-1321-3271-31147839327ref|WP_002009743.1|DNA-directed RNA polymerase subunit alpha [Bacillus cereus g...
406124Bacillus sp. m3-131 (0.03%)1E-1321-3271-31147839327ref|WP_010191539.1|DNA-directed RNA polymerase subunit alpha [Bacillus sp. m3-1...
315749Bacillus cytotoxicus NVH 391-981 (0.03%)1E-1321-3271-31147839327ref|YP_001373500.1|DNA-directed RNA polymerase subunit alpha [Bacillus cytotoxi...
1085386Bacillus cereus VDM0211 (0.03%)1E-1321-3271-31147739327ref|WP_000569645.1|DNA-directed RNA polymerase subunit alpha [Bacillus] gb|EEL5...
1428Bacillus thuringiensis1 (0.03%)1E-1321-3271-31147739327ref|NP_830037.1|DNA-directed RNA polymerase subunit alpha [Bacillus cereus A...
1053231Bacillus cereus VD1181 (0.03%)1E-1311-3271-31147639327ref|WP_002091540.1|DNA-directed RNA polymerase subunit alpha [Bacillus cereus] ...



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