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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 .
	MIVDSVSQKPTTLVQKTINIYLCGPTVYNDLHLGNTRPLIVFDVLNRVLKKAKYTVNFVQNITDIDDKIIKIAQQQEVSESVVTKQQITAYKSLLKKLNILPIKHIQITEKIDKIPDYIDQLVNQNHAYVSTQNNVYFAVNSLKQYGYLANRMVHLEETDTDKKNKLDFVLWKITTAGIKWNSKWGLGRPGWHVECAFLIDYCFKNELTIHGGGVDLKFPHHENENALHMALYNQPITKHWMHIGHLMIENQKMSKSLQNFLLAVDFLNFHDFRVLRWIFYQKHYLHPIDLNQSLIEKANNDIQRIAKTLNVARTWLVYSEQSELISPKQYDPVFSALLDNLNFANAVAAIWKLIKKINTSIKTKDFSVLREQLSFLEWSIDLLGISFKSIHTKLNVRLIKEWSILHKQKAMDKADQIRKKLIKKMLL
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-------------------------------------------------------------XXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	-EEE-----EEE----EEEEEE------------HHHEHHHHHHHHHHHHH----EEEEEEE----HHHHHHHHH----HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---EEE--------------HH-------HHHHHHHHH-------EEEE--------------------HHHHHHHHHHH---EEEEE----EE--HHHHHHHHHHHHH--HHHHH----EEEEE--------------HHHHHHH--HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    55	    0.112
  max. Y     7	    0.137
  max. S     5	    0.239
  mean S     1-6    0.200
       D     1-6    0.162    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.162 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-428	alignment	3sp1A_201	1-418	0.7856	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	1E-108	2-428	3-435	397	41	434	ref|NP_853461.2|	cysteinyl-tRNA synthetase [Mycoplasma gallisepticum str. R(l...
7998	Ictalurus punctatus	1 (0.03%)	5E-35	145-268	9-137	155	41	129	gb|ABD65519.1|	hypothetical protein [Ictalurus punctatus]
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	1E-109	2-428	3-436	401	40	435	ref|WP_004026312.1|	cysteinyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX534...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	1E-107	2-428	3-436	394	40	435	ref|WP_006689248.1|	cysteinyl-tRNA synthetase [Ureaplasma parvum] gb|EDT48990.1|...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	1E-107	2-428	3-436	394	40	435	ref|WP_004025653.1|	cysteinyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDU063...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-106	2-428	3-436	393	40	435	ref|WP_004027179.1|	cysteinyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDT498...
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	1E-106	2-428	3-436	393	40	435	ref|WP_006688925.1|	cysteinyl-tRNA synthetase [Ureaplasma parvum] gb|EDU19027.1|...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	1E-106	2-428	3-436	393	40	435	ref|YP_002284545.1|	cysteinyl-tRNA synthetase [Ureaplasma urealyticum serovar 10...
766747	synthetic Mycoplasma mycoides JCVI-syn1.0	1 (0.03%)	1E-101	2-428	3-441	374	39	440	gb|ACU78759.1|	cysteine--tRNA ligase [Mycoplasma mycoides subsp. capri str....
908340	Clostridium sp. HGF2	1 (0.03%)	1E-131	2-428	3-445	476	38	444	ref|WP_009588760.1|	cysteinyl-tRNA synthetase [Clostridium sp. HGF2] gb|EFR36166...
658659	Erysipelotrichaceae bacterium 3_1_53	1 (0.03%)	1E-129	2-428	4-446	468	38	444	ref|WP_009273655.1|	cysteinyl-tRNA synthetase [Erysipelotrichaceae bacterium 3_1...
428127	Eubacterium dolichum DSM 3991	4 (0.1%)	1E-127	2-428	5-446	460	38	443	ref|WP_004800922.1|	cysteinyl-tRNA synthetase [[Eubacterium] dolichum] gb|EDP102...
518637	Eubacterium biforme DSM 3989	1 (0.03%)	1E-123	2-428	3-443	447	38	442	ref|WP_003866024.1|	cysteinyl-tRNA synthetase [[Eubacterium] biforme] gb|EEC8921...
509193	Thermoanaerobacter brockii subsp. finnii Ako-1	2 (0.05%)	1E-153	2-428	3-453	548	36	452	ref|YP_001664358.1|	cysteinyl-tRNA synthetase [Thermoanaerobacter pseudethanolic...
59748	Candidatus Phytoplasma australiense	1 (0.03%)	1E-109	2-428	4-439	403	36	440	ref|YP_001799085.1|	Cysteinyl-tRNA synthetase [Candidatus Phytoplasma australien...
2133	Spiroplasma citri	4 (0.1%)	5E-97	2-428	3-445	361	36	445	emb|CAK98512.1|	probable cysteinyl-trna synthetase protein [Spiroplasma citr...
754503	Mycoplasma hyopneumoniae 7422	1 (0.03%)	6E-81	13-422	6-399	308	36	414	ref|YP_008292046.1|	cysteinyl-tRNA synthetase [Mycoplasma hyopneumoniae 7422] re...
262719	Mycoplasma hyopneumoniae J	1 (0.03%)	4E-78	13-422	6-399	298	36	414	sp|Q4A947.2|SYC_MYCHJ	RecName: Full=Cysteine--tRNA ligase; AltName: Full=Cysteinyl...
285006	Saccharomyces cerevisiae RM11-1a	1 (0.03%)	6E-23	2-76	25-104	115	36	80	gb|EDV12482.1|	hypothetical protein SCRG_03371 [Saccharomyces cerevisiae RM...
111823	Caldanaerobacter subterraneus	1 (0.03%)	1E-157	2-428	3-453	560	35	452	ref|WP_022588754.1|	cysteinyl-tRNA synthetase [Caldanaerobacter subterraneus] gb...