old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230
	MKITVLTLFENTIWPYLNSSIMLQAQKANLVQFEVVNWRNFCNDKHKTVDDMAYGGGSGMVLKAEPIINCLNFYKAPNSHVVLLSPEGEQFSQNCAKKLTKYEHLILLSGHYEGFDQRIYKYIDQIVSLGDFVLSGGELVALSVIDATVRLIKGVINDQSLICESFNDNLLDFPVYTRPYDLKGDKVPEVLLSGDHQKIESFRKEQQILKTAKYRPDLYKKYLENKNEKNK
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX
psipred	-EEEEEEE-HHHHHHHHH--HHHHHHH---EEEEEE-HHHH------------------EEEEHHHHHHHHHHHHH----EEEE--------HHHHHHHH----EEEEE-----HHHHHHHH---EEEHHHEEE----HHHHHHHHHHHHH----------HHHH-----------------------HHH----HHHHHHHHHHHHHHHHHHH-HHHHHH----HHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    20	    0.180
  max. Y    20	    0.191
  max. S    17	    0.227
  mean S     1-19   0.198
       D     1-19   0.195    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.195 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-231	alignment	5wyrB_301	1-248	0.9618	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
2097	Mycoplasma genitalium	1 (0.04%)	9E-95	1-230	1-230	352	99	230	ref|WP_009885589.1|	tRNA (guanine-N1)-methyltransferase [Mycoplasma genitalium]
722438	Mycoplasma pneumoniae FH	1 (0.04%)	1E-93	1-231	1-231	348	77	231	ref|YP_005881644.1|	tRNA (guanine-N(1)-)-methyltransferase [Mycoplasma pneumonia...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.04%)	2E-94	1-227	1-228	351	52	228	ref|YP_002285018.1|	tRNA (guanine-N(1)-)-methyltransferase [Ureaplasma urealytic...
2096	Mycoplasma gallisepticum	1 (0.04%)	2E-87	1-227	1-234	327	52	234	gb|AAF19036.1|	tRNA (guanine-N1)-methyltransferase [Mycoplasma gallisepticu...
708616	Mycoplasma gallisepticum str. F	1 (0.04%)	5E-87	1-223	1-230	326	52	230	ref|YP_005880940.1|	tRNA (guanine-N(1)-)-methyltransferase [Mycoplasma gallisept...
498741	Borrelia sp. SV1	1 (0.04%)	6E-97	1-230	1-233	359	51	233	ref|WP_008882157.1|	tRNA (guanine-N1)-methyltransferase [Borrelia sp. SV1] gb|EE...
521007	Borrelia burgdorferi N40	1 (0.04%)	1E-96	1-230	1-233	358	51	233	ref|YP_005806879.1|	tRNA (guanine-N1)-methyltransferase [Borrelia burgdorferi N4...
445984	Borrelia burgdorferi Bol26	1 (0.04%)	1E-96	1-230	1-233	359	50	233	ref|YP_002375198.1|	tRNA (guanine-N1)-methyltransferase [Borrelia burgdorferi ZS...
498739	Borrelia burgdorferi CA-11.2a	1 (0.04%)	9E-97	1-230	1-233	359	50	233	ref|WP_002661232.1|	tRNA (guanine-N1)-methyltransferase [Borrelia burgdorferi] g...
476212	Borrelia burgdorferi 94a	1 (0.04%)	2E-96	1-230	1-233	358	50	233	ref|WP_002661673.1|	tRNA (guanine-N1)-methyltransferase [Borrelia burgdorferi] g...
498742	Borrelia spielmanii A14S	1 (0.04%)	1E-96	1-230	1-233	358	50	233	ref|WP_006433653.1|	tRNA (guanine-N1)-methyltransferase [Borrelia spielmanii] gb...
521008	Borrelia burgdorferi JD1	1 (0.04%)	2E-96	1-230	1-233	357	50	233	ref|YP_005805786.1|	tRNA (guanine-N1)-methyltransferase [Borrelia burgdorferi JD...
1235796	Firmicutes bacterium M10-2	1 (0.04%)	1E-111	1-228	1-228	408	49	228	ref|WP_016319691.1|	tRNA (guanine(37)-N(1))-methyltransferase [Firmicutes bacter...
390236	Borrelia afzelii PKo	1 (0.04%)	1E-95	1-230	1-233	355	49	233	ref|YP_710148.1|	tRNA (guanine-N(1)-)-methyltransferase [Borrelia afzelii PKo...
301148	Caldibacillus debilis	1 (0.04%)	1E-118	1-230	2-236	431	48	235	ref|WP_020156284.1|	tRNA (guanine-N1)-methyltransferase [Caldibacillus debilis]
42858	Staphylococcus lentus	1 (0.04%)	1E-118	1-230	1-233	430	48	233	ref|WP_017000104.1|	tRNA (guanine-N1)-methyltransferase [Staphylococcus lentus]
71237	Staphylococcus vitulinus	1 (0.04%)	1E-118	1-230	1-233	429	48	233	ref|WP_016910742.1|	tRNA (guanine-N1)-methyltransferase [Staphylococcus vitulinu...
1491	Clostridium botulinum	1 (0.04%)	1E-110	1-230	1-231	404	48	232	ref|WP_017352912.1|	tRNA (guanine-N1)-methyltransferase [Clostridium botulinum]
508765	Clostridium botulinum B str. Eklund 17B	1 (0.04%)	1E-110	1-230	1-231	402	48	232	ref|YP_001885447.1|	tRNA (guanine-N(1)-)-methyltransferase [Clostridium botulinu...
428126	Clostridium spiroforme DSM 1552	1 (0.04%)	1E-109	1-227	1-227	401	48	227	ref|WP_004609719.1|	tRNA (guanine-N1)-methyltransferase [[Clostridium] spiroform...