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Job 85106 [SSGCID - MygeA.00571.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] tRNA modification GTPase MnmE (MG_008) - BATCH:85100

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGK
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (12%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX--------------------------------------------------XXXXXXXXXXXXXXXXXXXX--------------------------------------
coiled-coils (10%)
-------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (4%)
--------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred
------EEEE-------EEEEEEEEHHHHHHHHHHH---------EEEEEEEEE--------EEEEEEE----------EEEEE----HHHHHHHHHHHHHH-------HHHHHHHHHH--HHHHHHHHHHHHEE---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH---HHH--------EEEEE------HHHHHHHHH---EEEEE---------EEEEEEE--EEEEEEE----------HHHHHHHHHHHHHH---EEEEE------HHHHHHHHHHHH----EEEEEE-----------HHHHHH--HHHHHHHHHHHHHHHH------EEEEHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----HHHHHHHHH-------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.188
  max. Y    19	    0.201
  max. S    18	    0.278
  mean S     1-18   0.202
       D     1-18   0.201    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.201 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-442     alignment     1xzpA_201     1-456   0.9632   HYDROLASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
2097Mycoplasma genitalium1 (0.03%)1E-10855-4421-388398100388ref|WP_009885977.1|tRNA modification GTPase TrmE, partial [Mycoplasma genitaliu...
53345Enterococcus durans2 (0.05%)2E-9910-2731-27036940270gb|ABV72145.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
160454Enterococcus pallens1 (0.03%)3E-9810-2731-27036540270gb|ABV72135.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
150033Enterococcus ratti1 (0.03%)3E-9810-2731-27036540270gb|ABV72151.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
1351Enterococcus faecalis1 (0.03%)2E-9610-2731-27035940270gb|ABV72141.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
93058Prochlorococcus marinus str. MIT 92021 (0.03%)3E-8015-29221-30230540283ref|WP_002805694.1|tRNA modification GTPase TrmE [Prochlorococcus marinus] gb|E...
71453Tetragenococcus solitarius1 (0.03%)1E-10010-2731-26937239269gb|ABV72136.1|GTP-binding thiophene and furan oxidation protein [Tetrageno...
1354Enterococcus hirae1 (0.03%)2E-9910-2731-27036939270gb|ABV72147.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
57732Enterococcus asini1 (0.03%)1E-9710-2731-27036339270gb|ABV72160.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
112904Enterococcus villorum1 (0.03%)1E-9510-2731-27035639270gb|ABV72149.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
626096Ureaplasma urealyticum serovar 2 str. ATCC 278142 (0.05%)1E-1096-4423-43840138440ref|YP_002284431.1|tRNA modification GTPase TrmE [Ureaplasma urealyticum serova...
515611Ureaplasma urealyticum serovar 13 str. ATCC 336981 (0.03%)1E-1096-4423-43840138440ref|WP_004027133.1|tRNA modification GTPase TrmE [Ureaplasma urealyticum] gb|ED...
550747Ureaplasma urealyticum serovar 12 str. ATCC 336961 (0.03%)1E-1076-4423-43739538440ref|WP_004027048.1|tRNA modification GTPase TrmE [Ureaplasma urealyticum] gb|ED...
154621Enterococcus phoeniculicola1 (0.03%)1E-9910-2731-27037038270gb|ABV72163.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
37734Enterococcus casseliflavus3 (0.08%)5E-9810-2731-27036538270gb|ABV72158.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
44007Enterococcus pseudoavium1 (0.03%)7E-9810-2731-27036438270gb|ABV72134.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
406562Streptococcus pneumoniae SP19-BS752 (0.05%)6E-982-2774-28336438280ref|WP_001812263.1|tRNA modification GTPase TrmE [Streptococcus pneumoniae] gb|...
160453Enterococcus gilvus1 (0.03%)2E-9710-2731-27036238270gb|ABV72131.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
71451Enterococcus malodoratus1 (0.03%)3E-9710-2731-27036238270gb|ABV72133.1|GTP-binding thiophene and furan oxidation protein [Enterococ...
249189Enterococcus hermanniensis1 (0.03%)5E-9710-2731-27036138270gb|ABV72164.1|GTP-binding thiophene and furan oxidation protein [Enterococ...






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