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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430
	MEQFNAFKSLLKKHYEKTIGFHDKYIKDINRFVFKNNVLLILLENEFARNSLNDNSEIIHLAESLYEGIKSVNFVNEQDFFFNLAKLEENSRDTLYQNSGLSKNYTFQNFVISEGNKRAYEAGVRLAETQDNEFSPLFIYGETGLGKTHLLQAIGNEKFRNFPNARVKYVVSSDFAQEVVDAFYQRDKGIEKLKKNYENLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDELIDIDARMISRFKSGLLLKIEKHNLSSLCEILTVKLKEKDPNIQITNEARHDAAQISGNDVRALNGIATKLLFFAKTSKQNLINTENLKEILFEEFEKFHKKSFDPYLLIENVCRRFNVPMDSVLSENRKAELVRVRDVCNYLLRQKYNMQFQQIGKIFKRSHSSVLMAVKRVAKMIENDSSLRDVITSLVI
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (7%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (10%)	---------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX--XX-------------------------------------------XXXXXX-----------
psipred	--HHHHHHHHHHHHH---HHHHHHHHH--EEEEEE--EEEEEE--HHHHHHHHH---HHHHHHHH-------EEEE----------------------------------------HHHHHHHHHHHH--------EEEE-----HHHHHHHHHHHHHHHH----EEEEEEHHHHHHHHHHHHH-----HHHHHHHH----HHHHH--------HHHHHHHHHHHHHHHH---EEEEE------------HHHHHH---EEEEEE----HHHHHHHHHHHHHHHH------HHHHHHHHH-----HHHHHHHHHHHHHHHHH------------------------------------HH-----HHHHH-----HHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
sam	--HHHHHHHHHHHHHH--HHHHHHHH---EEEEE---EEEEEE--HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEE--------------------------EEEEEEE---HHHHHHHHHHHHH--------HHH-----HHHHHHHHHHHHHHHHH----EEEEEEHHHHHHHHHHHHHH----HHHHHHHHH--EEEEEE-HHHHH---HHHHHHHHHHHHHHHH--EEEEE----HHH---HHHHHHHHH----EEEE----HHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH------EE-HHHHHHHHHHHH---HHHHH-----H----HHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHH-
jufo	-HHHHHHHHHHHHHH-----HHHHHHH-EE-HH----EEEEEEE-HHHHHHHH-----HHHHH--------EE-------------------------------------------HHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHHHHHH---EEEEEEE-HHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHH---HHHHHHHHHHHHHHH---EEEEEE-------------HHHHHH--EEEEEE---HHHHHHHHHHHHHHH---------HHHHHHHH---HHHHHHHHHHHHHHHHH-----------HHHHHHH---------------HHHHHH----------------HHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHHHE

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    49	    0.116
  max. Y     5	    0.125
  max. S     3	    0.225
  mean S     1-4    0.189
       D     1-4    0.150    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.150 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-95	alignment	2jmpA_201	1-100	1.000000	DNA BINDING PROTEIN
	96-437	alignment	1fnnA_102	1-379	0.867900	CELL CYCLE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1809	Mycobacterium ulcerans	1 (0.03%)	2E-24	99-171	116-188	120	51	73	dbj|BAC55062.1|	DnaA [Mycobacterium ulcerans]
1781	Mycobacterium marinum	1 (0.03%)	2E-24	99-171	116-188	120	51	73	dbj|BAC55050.1|	DnaA [Mycobacterium marinum]
1768	Mycobacterium kansasii	1 (0.03%)	4E-24	99-171	120-192	119	51	73	dbj|BAC55047.1|	DnaA [Mycobacterium kansasii]
1787	Mycobacterium szulgai	1 (0.03%)	5E-25	81-171	101-191	122	42	91	dbj|BAC55058.1|	DnaA [Mycobacterium szulgai]
1784	Mycobacterium simiae	1 (0.03%)	9E-17	77-171	93-187	95	42	95	dbj|BAC55056.1|	DnaA [Mycobacterium simiae]
1214102	Mycobacterium fortuitum subsp. fortuitum DSM 46621	1 (0.03%)	1E-25	77-171	94-188	124	41	95	dbj|BAC55043.1|	DnaA [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
1789	Mycobacterium xenopi	1 (0.03%)	1E-17	78-171	85-178	98	41	94	dbj|BAC55064.1|	DnaA [Mycobacterium xenopi]
1783	Mycobacterium scrofulaceum	1 (0.03%)	3E-17	78-171	94-187	97	41	94	dbj|BAC55055.1|	DnaA [Mycobacterium scrofulaceum]
44454	Mycobacterium avium subsp. avium	1 (0.03%)	5E-17	81-171	97-187	96	41	91	dbj|BAC55040.1|	DnaA [Mycobacterium avium subsp. avium]
444177	Lysinibacillus sphaericus C3-41	2 (0.05%)	4E-52	117-250	8-139	212	40	134	ref|YP_001695777.1|	DnaA [Lysinibacillus sphaericus C3-41] ref|WP_012291825.1| D...
1313	Streptococcus pneumoniae	3 (0.07%)	5E-49	139-304	1-163	202	40	167	gb|AAL30942.1|	DNA polymerase initiator protein [Streptococcus pneumoniae] ...
1772	Mycobacterium smegmatis	1 (0.03%)	5E-26	77-171	91-185	125	40	95	dbj|BAC55057.1|	DnaA [Mycobacterium smegmatis]
219305	Micromonospora sp. ATCC 39149	1 (0.03%)	2E-45	132-264	30-160	189	38	133	ref|WP_007073825.1|	chromosomal replication initiator protein dnaA, partial [Mic...
264	Francisella novicida	2 (0.05%)	2E-35	100-212	47-157	157	37	113	emb|CAJ98747.1|	replication initiator [Francisella novicida]
675786	Francisella sp. FnSp1	1 (0.03%)	5E-35	100-212	47-157	155	37	113	emb|CAJ98759.1|	replication initiator [Francisella novicida] gb|ACW20340.1| ...
119857	Francisella tularensis subsp. holarctica	3 (0.07%)	5E-35	100-212	47-157	155	37	113	emb|CAJ98744.1|	replication initiator [Francisella tularensis subsp. mediasi...
6945	Ixodes scapularis	1 (0.03%)	1E-28	93-207	15-129	134	37	117	ref|XP_002405928.1|	replication initiator DnaA, putative [Ixodes scapularis] gb|...
369796	Spiroplasma sp. SHRIMP	1 (0.03%)	5E-26	167-307	9-149	125	36	141	gb|ACB37397.1|	DnaA [Spiroplasma eriocheiris] gb|ACB37398.1| DnaA [Spiropla...
2144	Spiroplasma mirum	1 (0.03%)	1E-25	167-307	9-149	124	36	141	gb|ACB37399.1|	DnaA [Spiroplasma mirum]
90370	Salmonella enterica subsp. enterica serovar Typhi	1 (0.03%)	1E-38	168-305	1-134	167	35	138	gb|ABL01757.1|	unknown, partial [Salmonella enterica subsp. enterica serova...