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Job 85116 [SSGCID - MygeA.17907.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] tRNA N6-adenosine threonylcarbamoyltransferase (MG_046) - BATCH:85100

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MEQPLCVLGIETTCDDTGLSIVIDQKIKSNIVISSANLHVKTGGVVPEIAARCHEQNLFKAIRDLNFEIRDLSHIAYACNPGLAGCLHVGATFARSLSFLLDKPLLPINHLYAHIFSCLIDQDLNKLQLPALGLVISGGHTAIYLVKSFYELELIAETSDDAIGEVYDKIGRAMGFDYPAGSKIDSLFNKELVKPHYFFKPSTKWTKFSYSGLKSQCLNKIKQISANKTRIDWSELASNFQATIIDHYIDHVKNAIKKFAPKMLLVGGGVSANSYLSNRISTLNLPFLIADSKYTSDNGAMIGFYASLLINGDKN
tmhmm (0)
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low complexity (0%)
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coiled-coils (0%)
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disordered (2%)
XX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred
-----EEEEEE-----EEEEEEE--EEEEEEEEEEEEEE-------HHHHHHHHHHHHHHHHHH---------EEEEE---------HHHHHHHHHHHHHH---------HHHHHHHHHHHH---------EEEE------EEEEEEE---EEEEEE----HHHHHHHHHHHH--------HHHHHHHH-----------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---EEEEE-HHH--HHHHHHHHH---EEE---HHH---HHHHHHHHHHHHHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    37	    0.131
  max. Y    51	    0.137
  max. S    34	    0.211
  mean S     1-50   0.120
       D     1-50   0.130    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.130 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-315     alignment     3enoA_202     1-329   0.9127   hydrolase/unknown function


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
515608Ureaplasma parvum serovar 1 str. ATCC 278131 (0.03%)7E-811-3141-31430741318ref|WP_006689241.1|protein kinase [Ureaplasma parvum] gb|EDT48960.1| O-sialogly...
519851Ureaplasma parvum serovar 6 str. ATCC 278181 (0.03%)9E-811-3141-31430641318ref|WP_006688559.1|protein kinase [Ureaplasma parvum] gb|EDU19221.1| O-sialogly...
626096Ureaplasma urealyticum serovar 2 str. ATCC 278141 (0.03%)6E-801-3141-31430441318ref|YP_002284848.1|putative DNA-binding/iron metalloprotein/AP endonuclease [Ur...
883151Myroides odoratimimus CCUG 127001 (0.03%)1E-1081-3111-32339739324ref|WP_006259211.1|O-sialoglycoprotein endopeptidase [Myroides odoratimimus] gb...
883152Myroides odoratimimus CCUG 129011 (0.03%)1E-1071-3111-32339639324ref|WP_006260974.1|O-sialoglycoprotein endopeptidase [Myroides odoratimimus] gb...
883153Myroides odoratimimus CCUG 38371 (0.03%)1E-1071-3111-32339639324ref|WP_006263365.1|O-sialoglycoprotein endopeptidase [Myroides odoratimimus] gb...
2133Spiroplasma citri1 (0.03%)1E-915-3101-31034239314emb|CAK98601.1|probable glycoprotein endopeptidase transmembrane [Spiroplas...
273035Spiroplasma kunkelii CR2-3x1 (0.03%)2E-915-3101-31034239314gb|AAP58924.1|glycoprotein endopeptidase [Spiroplasma kunkelii CR2-3x]
2109Mycoplasma synoviae1 (0.03%)3E-865-3131-30632539313ref|YP_278148.2|DNA-binding/iron metalloprotein/AP endonuclease [Mycoplasma ...
1219Prochlorococcus marinus1 (0.03%)2E-386-1634-16716639166emb|CAB44498.1|putative sialoglycoprotease [Prochlorococcus marinus]
212717Clostridium tetani E881 (0.03%)1E-1121-3101-32041338322ref|NP_782961.1|DNA-binding/iron metalloprotein/AP endonuclease [Clostridium...
1161912Thermosipho africanus H17ap603341 (0.03%)1E-1125-3131-31541038319ref|WP_004104491.1|O-sialoglycoprotein endopeptidase [Thermosipho africanus] gb...
526218Sebaldella termitidis ATCC 333861 (0.03%)1E-1045-3151-31738538321ref|YP_003309861.1|glycoprotease family metalloendopeptidase [Sebaldella termit...
766747synthetic Mycoplasma mycoides JCVI-syn1.01 (0.03%)3E-955-3101-31335438316gb|ACU78615.1|probable O-sialoglycoprotein endopeptidase [Mycoplasma mycoi...
496833Mycoplasma fermentans PG181 (0.03%)7E-875-3112-30932738313ref|YP_007761954.1|hypothetical protein [Mycoplasma fermentans PG18] ref|WP_015...
1231072Clostridium tetani 121245691 (0.03%)1E-1131-3131-32341637325ref|YP_008774672.1|DNA-binding/iron metalloprotein/AP endonuclease [Clostridium...
484019Thermosipho africanus TCF52B1 (0.03%)1E-1125-3131-31540937319ref|YP_002334469.1|DNA-binding/iron metalloprotein/AP endonuclease [Thermosipho...
1041504Candidatus Arthromitus sp. SFB-rat-Yit1 (0.03%)1E-1093-3152-32240237323ref|YP_004856702.1|O-sialoglycoprotein endopeptidase [Candidatus Arthromitus sp...
1202532Flavobacterium sp. F521 (0.03%)1E-1091-3141-32640037327ref|WP_008468807.1|O-sialoglycoprotein endopeptidase [Flavobacterium sp. F52] g...
376686Flavobacterium johnsoniae UW1012 (0.05%)1E-1097-3148-32640037320ref|YP_001196911.1|DNA-binding/iron metalloprotein/AP endonuclease [Flavobacter...






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