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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360
	MSIIAKTVFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQDFQQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHDFCKQINPNSLFATGHYAKINMIENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPLADLKKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWKTKQTISEHDGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQFNWLYTPKQLPSQVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGVLYTLDQICLGAGLI
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	XXXX---XX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	------EEEEE----HHHHHHHHHHHH----EEEEE---------------------------HHHHHHHHHHHHH----EEE---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----EEHH----EEEE----EEEEE-------EEE------HHHHHHHHHHH----HHHHHHHHHHH----EE--------------HHHHHHHH-------EEEEEEEEEEE----EEEEEE--------------EEEEEE-----EEEEE--HHHHHH-EEEEE------------EEEEEEEEE----EEEEEEE----EEEEEE-----------EEEEEE--EEEEEEEE-

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.281
  max. Y    19	    0.316
  max. S     4	    0.461
  mean S     1-18   0.352
       D     1-18   0.336    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.336 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-367	alignment	2hmaA_201	1-364	0.9214	TRANSFERASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
2111	Mycoplasma arthritidis	1 (0.03%)	7E-36	4-114	1-109	158	48	111	gb|AAT66133.1|	tRNA (5-methylaminomethyl-2-thiouridyl-methyltransferase-lik...
980422	Strawberry lethal yellows phytoplasma (CPA) str. NZSb11	1 (0.03%)	1E-116	6-367	2-362	424	46	368	ref|YP_001799325.1|	tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma a...
428126	Clostridium spiroforme DSM 1552	2 (0.05%)	1E-134	2-367	9-374	486	44	370	ref|WP_004609281.1|	thiouridylase [[Clostridium] spiroforme] gb|EDS75410.1| tRNA...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-106	5-367	286-652	392	44	369	ref|YP_005880409.1|	Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin ...
419109	Vibrio parahaemolyticus AQ3810	1 (0.03%)	8E-56	109-261	1-154	224	44	155	ref|WP_005468128.1|	3-oxoacyl-[acyl-carrier-protein] synthase 1, partial [Vibrio...
451640	Catenibacterium mitsuokai DSM 15897	1 (0.03%)	1E-140	6-367	2-363	503	43	366	ref|WP_006506267.1|	thiouridylase [Catenibacterium mitsuokai] gb|EEF93318.1| tRN...
665941	Coprobacillus sp. 3_3_56FAA	1 (0.03%)	1E-138	4-367	1-364	497	43	368	ref|WP_003538101.1|	thiouridylase [Erysipelotrichaceae] gb|EDS17532.1| tRNA (5-m...
469597	Coprobacillus sp. 8_2_54BFAA	1 (0.03%)	1E-138	4-367	1-364	497	43	368	ref|WP_008791806.1|	thiouridylase [Coprobacillus sp. 8_2_54BFAA] gb|EHQ47188.1| ...
469596	Coprobacillus sp. 29_1	1 (0.03%)	1E-135	4-367	3-366	489	43	368	ref|WP_008787880.1|	thiouridylase [Coprobacillus sp. 29_1] gb|EFW05946.1| tRNA-s...
545696	Holdemania filiformis DSM 12042	1 (0.03%)	1E-127	7-367	3-362	460	43	364	ref|WP_006060676.1|	thiouridylase [Holdemania filiformis] gb|EEF66327.1| tRNA (5...
706433	Solobacterium moorei F0204	1 (0.03%)	1E-123	6-367	2-359	449	43	364	ref|WP_006526460.1|	thiouridylase [Solobacterium moorei] gb|EFW23849.1| tRNA (5-...
243272	Mycoplasma arthritidis 158L3-1	1 (0.03%)	1E-122	4-367	1-357	445	43	366	ref|YP_001999824.1|	tRNA-specific 2-thiouridylase MnmA [Mycoplasma arthritidis 1...
1129368	Spiroplasma melliferum IPMB4A	1 (0.03%)	1E-137	6-367	2-364	496	42	366	ref|WP_004028677.1|	thiouridylase [Spiroplasma melliferum] gb|EHK52121.1| tRNA-s...
2133	Spiroplasma citri	2 (0.05%)	1E-136	6-367	2-364	490	42	366	emb|CAK99508.1|	probable trna 5-methylaminomethyl-2-thiouridylate-methyltran...
743965	Mycoplasma putrefaciens KS1	1 (0.03%)	1E-132	6-367	2-369	476	42	371	ref|YP_004790192.1|	tRNA-specific 2-thiouridylase mnmA [Mycoplasma putrefaciens ...
2110	Mycoplasma agalactiae	1 (0.03%)	1E-126	4-367	3-361	459	42	367	ref|YP_003515609.1|	tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase ...
512564	Mycoplasma crocodyli MP145	1 (0.03%)	1E-126	3-367	1-359	458	42	367	ref|YP_003559870.1|	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase...
496833	Mycoplasma fermentans PG18	1 (0.03%)	1E-125	2-367	10-369	455	42	368	ref|YP_007762094.1|	hypothetical protein [Mycoplasma fermentans PG18] ref|WP_015...
518637	Eubacterium biforme DSM 3989	1 (0.03%)	1E-125	7-367	2-362	455	42	365	ref|WP_003864030.1|	thiouridylase [[Eubacterium] biforme] gb|EEC91172.1| tRNA (5...
943945	Mycoplasma fermentans M64	1 (0.03%)	1E-125	3-367	1-359	454	42	367	ref|YP_003922890.1|	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase...