old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790
	MYNHNLIEEKWLKKWKNKDVNRFESDSNKKKYYVLDMFPYPSAAGLHLGHVRAYTITDVISRYYKAKGFNVIHPIGFDAFGLPAEQYAINSNQNPGSWTDQNINNFINQLTSFGFDYDYHLSLKTTDPRYYKYTQWIFSELFKANLAELVDIDVNWCEQLGTVLANEEVLIDSNGNAVSERGSFSVEKRKMKQWVLKITTFADALLEGLDTLDWPEPIKEMQRNWIGKSKGVTINFQLKDHKEAIAIFTTKPQTIFGVSFLAVSTNHWLAKKIAETNKKVASFLKKQLQKTTTLKQKATLYDGIDLLTNAIHPLTNELIPVYVANYVIEGYGTDAIMGVGAHNENDNFFARKQKLKIINVIDKKERLQNSFAYNGLTTKEAQVAITNELISQNKAKLTTVYKLRDWIFSRQRYWGEPFPIIFDENNTPHLVEQLPVELPLLENYKPDGSGNSPLMRNQAWVNIVKDNIHYQRETNTMPQWAGSCWYYLGYLMLIKNPNFWPIDSKEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFWHKFLFDKKLVSTKEPFQKLINQGMVLGPDGKKMSKSKGNTINPTPLVDSHGADALRLYLMFMGPISASLTWNDEGLNGMRRWLDRVYNFFFNHAVVTDQVSQETIFAYNLFLKNSYCHLDKHELNLVISEMMIFLNFLYKTKKISLNYAKGFLTVLSFFAPFLAEELNEKCGLEPFVVKQAISLVDYQLFETAKTKVILSINGKFKAAKEFTKGSLEIDVLESFKQDKEINDILNQPIERVVYVQDRIINVLLKK
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	X-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------X----------------------------------------------------------------------------------------------------------------------X-X---XX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	---HHHHHHHHHHHHHH--------------EEEEE---------------HHHHHHHHHHHHHH-----------------HHHHHHHHH----HHHHHHHHHHHHHHHHHH---------EE---HHHHHHHHHHHHHHHH---EEE--EEE---------HH--EEEEE-----EEEE---EEEEE---EEEEEEEE-HHHHH-------------EEEEEEEEEEEEEEEE--------EEEEEE---EEE---EEEEE----HHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------EEE--------EEEE------------EEE-------EEEEEEE----EEEEE---------HHH--HHHHHHHHHHHHHHHHH--------------EEEEE--------EEE-----EEE---EEE----------------HHH-----EE-----EEEE--------EEE---HHHHH--------------HHHHHHHHH----EEEE----HHHHHHHHHHHHHHHHH------------EEEE--EEE----EEEEE-------HHHHHHH----HHHHHHHH-----------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEE-------HHHHHH-EEEEEEEEE-EEEEEEEE-----HHHHHHHHH--HHHHHH-----EEEEEE---EEEEEE--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    54	    0.149
  max. Y     6	    0.145
  max. S     5	    0.241
  mean S     1-5    0.228
       D     1-5    0.178    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-792	alignment	5ah5A_301	1-789	0.7857	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662947	Mycoplasma genitalium M2288	1 (0.03%)	0.0	1-792	1-792	887	100	792	ref|YP_006600295.1|	leucyl-tRNA ligase [Mycoplasma genitalium M6282] ref|YP_0066...
662945	Mycoplasma genitalium M6320	1 (0.03%)	0.0	1-792	1-792	885	100	792	ref|YP_006599807.1|	leucyl-tRNA ligase [Mycoplasma genitalium M2321] ref|YP_0066...
488339	synthetic Mycoplasma genitalium JCVI-1.0	1 (0.03%)	0.0	1-792	1-792	885	100	792	ref|NP_072933.1|	leucyl-tRNA synthetase [Mycoplasma genitalium G37] ref|WP_01...
2097	Mycoplasma genitalium	1 (0.03%)	0.0	37-792	1-756	841	100	756	ref|WP_009885897.1|	leucyl-tRNA synthetase [Mycoplasma genitalium]
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	0.0	1-791	1-791	868	73	791	ref|YP_005175625.1|	leucyl-tRNA synthetase [Mycoplasma pneumoniae 309] ref|YP_00...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	0.0	1-791	1-805	792	50	812	ref|YP_005880675.1|	leucyl-tRNA synthetase [Mycoplasma gallisepticum str. F] ref...
1048830	Mycoplasma iowae 695	1 (0.03%)	0.0	1-791	1-801	869	49	802	ref|WP_004025070.1|	leucyl-tRNA synthetase [Mycoplasma iowae] gb|EGZ31217.1| leu...
2133	Spiroplasma citri	2 (0.05%)	0.0	2-791	3-805	886	47	807	emb|CAK99637.1|	leucyl-trna synthetase protein [Spiroplasma citri]
1129368	Spiroplasma melliferum IPMB4A	1 (0.03%)	0.0	2-772	3-785	869	47	787	ref|WP_004027795.1|	leucyl-tRNA synthase [Spiroplasma melliferum] gb|EHJ90617.1|...
908341	Paenibacillus sp. HGF5	1 (0.03%)	0.0	2-622	11-637	793	47	638	ref|WP_009589237.1|	leucine--tRNA ligase, partial [Paenibacillus sp. HGF5] gb|EG...
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	0.0	1-790	1-806	879	46	807	ref|WP_006688633.1|	leucyl-tRNA synthetase [Ureaplasma parvum] gb|EDT49152.1| le...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	0.0	1-790	1-806	877	46	807	ref|YP_002284773.1|	leucyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 st...
550773	Ureaplasma urealyticum serovar 9 str. ATCC 33175	1 (0.03%)	0.0	1-790	1-806	877	46	807	ref|WP_004026879.1|	leucyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX53715....
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	2 (0.05%)	0.0	1-790	1-806	876	46	807	ref|WP_004027235.1|	leucyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDT49443....
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	2 (0.05%)	0.0	1-790	1-806	876	46	807	ref|WP_004026207.1|	leucyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDU06286....
515609	Ureaplasma parvum serovar 14 str. ATCC 33697	1 (0.03%)	0.0	1-790	1-806	875	46	807	ref|WP_006689115.1|	leucyl-tRNA synthetase [Ureaplasma parvum] gb|EDT87534.1| le...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	0.0	1-790	1-806	873	46	807	ref|WP_004026489.1|	leucyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX52960....
243272	Mycoplasma arthritidis 158L3-1	1 (0.03%)	0.0	1-791	1-804	834	46	809	ref|YP_001999799.1|	leucyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1] ref|...
634997	Mycoplasma hyorhinis DBS 1050	1 (0.03%)	0.0	1-791	1-788	820	46	794	ref|YP_005205096.1|	leucyl-tRNA synthetase [Mycoplasma hyorhinis GDL-1] ref|YP_0...
347256	Mycoplasma hominis ATCC 23114	1 (0.03%)	0.0	1-791	1-805	812	46	809	ref|YP_003302844.1|	Leucyl-tRNA synthetase [Mycoplasma hominis ATCC 23114] ref|W...