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Job 85120 [SSGCID - MygeA.19936.c] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Translation initiation factor IF-2 (MG_142) - BATCH:85100

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MKKNRAFNQVKKTKFDGRIKTSAKHQLRNVKTGVKDGVFIYKGPLTVSEFASKTNIAVANIIKHFFLNGLALTVNSVLTNEQLADACVNFGFDFKMETEVTHENIVANIQFEDSDDLLQPRPPIVTIMGHVDHGKTSLLDTIRKTNVTAKEFGGITQKIGAYQVKNHQNKTITFIDTPGHEAFTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVFINKMDKPTANPDLVIQQLNKFDLVPEAWGGKTIFVMGSALTGQGINELLDNILLLGEVEGYQANYNAHSSGYAIEVQTSKGLGPIANVIVKRGTLKLGDIVVLGPAYGRVRTMHDENGNSLKQATPSKPVQISGFDIMPVAGEKFIVFDDEKDAKLIANKFKEQQKQKANNLTVNQTLKEQIKNKEIKILNLIFKADSDGSLQAIKQAVENINVAKISLSIIHAAVGQISESDIMLAKASGALLFSLNLGLSQTVKNIASLQGVKLEVHYHIPKLAEEIENILKGQLDPVYEEIEIGKAEVLQLWFHSKIGNIAGTIVKSGKIKRGNLCKLFRDKEIIFEGRIDSLKNEKTPVNLIETGKNCGIVINGCNDIKIGDIIVAYEKQIVKDGKL
tmhmm (0) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (11%) 
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------XXX----------------------------------------------------------------------------------------------------------------------------------XXX
psipred 
----------------------HH-------------EEE----EEHHHHHHHH---HHHHHHHHHH------------HHHHHHHHHHH--EEEEE---HHHHHHHHH-----HHH------EEEEEEEE---HHHHHHHHHHH---------HHHHH--EEE------EEEEE----HHHHHHHHHHHHHH--EEEEEEE-----HHHHHHHHHHHHH----EEEEEE--------HHHHHHHHHHH------------EEEEEEE----HHHHHHHHHHHHHH-----------EEEEEEEEE-----EEEEEEEE--------EEEE-----EEEEEE----EE-------EEEEEEEEEE------EEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEEEEE-----HHHHHHHHHH-------EEEEE-------HHHHH-------EEEEEE----HHHHHHHHH---EEEEEEEHHHHHHHHHHHHHH------EEEEEEEEEEEEEEEE----EEEEEEEE--EEEE--EEEEE---EEEEEEEEHHH--------EE----EEEEEE----------EEEEEEEEEEE----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    51	    0.115
  max. Y     9	    0.210
  max. S     8	    0.499
  mean S     1-8    0.444
       D     1-8    0.301    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.301 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-619     alignment     3j4jA_301     1-569   0.560700   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
582Morganella morganii1 (0.03%)3E-52138-3301-19221355193emb|CAA12766.1|translational initiation factor IF2 [Morganella morganii]
1005996Raoultella planticola ATCC 335311 (0.03%)5E-87123-4032-28132952281gb|AAQ72416.1|InfB [Raoultella planticola ATCC 33531]
244366Klebsiella variicola3 (0.07%)4E-89106-4081-30233551303gb|AAQ72415.1|InfB [Klebsiella variicola]
577Raoultella terrigena1 (0.03%)2E-87113-4032-29133051291gb|AAQ72417.1|InfB [Raoultella terrigena]
472694Pantoea brenneri1 (0.03%)1E-54185-3861-20222151202gb|ABW23907.1|initiation translation factor 2 [Pantoea brenneri] gb|ABW239...
472693Pantoea eucrina1 (0.03%)1E-54185-3861-20222151202gb|ABW23904.1|initiation translation factor 2 [Pantoea eucrina] gb|ABW2390...
574095Pantoea allii1 (0.03%)2E-54185-3861-20222151202gb|ABW23823.1|initiation translation factor 2 [Pantoea eucalypti] gb|ABW23...
470934Pantoea vagans2 (0.05%)2E-54185-3861-20222151202gb|ABW23814.1|initiation translation factor 2 [Pantoea vagans] gb|ABW23816...
66271Pantoea stewartii subsp. stewartii1 (0.03%)2E-54185-3861-20222051202gb|ABW23891.1|initiation translation factor 2 [Pantoea stewartii subsp. st...
472664Erwinia sp. BCC0031 (0.03%)3E-54185-3861-20222051202gb|ABW23815.1|initiation translation factor 2 [Erwinia sp. BCC003]
549Pantoea agglomerans1 (0.03%)3E-54185-3861-20222051202gb|ABW23877.1|initiation translation factor 2 [Pantoea agglomerans]
470932Pantoea deleyi1 (0.03%)4E-54185-3861-20221951202gb|ABW23831.1|initiation translation factor 2 [Pantoea deleyi]
271870Pantoea sp. A2021 (0.03%)4E-54185-3861-20221951202gb|ABW23828.1|initiation translation factor 2 [Pantoea stewartii subsp. in...
472695Pantoea septica1 (0.03%)5E-54185-3861-20221951202gb|ABW23901.1|initiation translation factor 2 [Pantoea septica] gb|ABW2390...
55212Erwinia rhapontici1 (0.03%)6E-54185-3861-20221951202gb|ABW23899.1|initiation translation factor 2 [Erwinia rhapontici] gb|AEO2...
55209Pantoea cypripedii1 (0.03%)1E-53185-3861-20221851202gb|ACJ74057.1|initiation translation factor 2 [Pantoea cypripedii] gb|ACJ7...
69224Erwinia psidii1 (0.03%)2E-53185-3861-20221751202gb|ACJ74061.1|initiation translation factor 2 [Erwinia psidii]
182337Erwinia billingiae1 (0.03%)2E-52185-3861-20221451202gb|ABW23915.1|initiation translation factor 2 [Erwinia billingiae] gb|AEO2...
405535Bacillus cereus AH8202 (0.05%)1E-10319-35887-42538250340ref|YP_002452775.1|translation initiation factor IF-2 [Bacillus cereus AH820] r...
642227Tatumella morbirosei1 (0.03%)2E-53185-3861-20221750202gb|ACA64039.1|InfB [Tatumella morbirosei] gb|ACA64040.1| InfB [Tatumella m...



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