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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800
	MAIFNFLKLISPKNRILSKANRIASEVESYKNYYRNLTDQQLFEESNKLVDLVTKQNYTILDVCVAALALIREVVYRETGEFAYRVQIIGAFIVLSGDFAEMMTGEGKTLTIVLAAYVSALEKRGVHVVTVNEYLAQRDANNAMKILKRVGMSVGCNFANLSPQLKQAAFNCDVTYTTNSELGFDYLRDNMVHSYQDKKIRELHFAIVDEGDSVLIDEARTPLIISGPSKNEFGLYVAVDRFVKSLTEQEFKIDPESRAASLTELGIKKAEQTFKKENLFALENSDLFHKIMNGLTAVKVFEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGLQQAVQAKEYVEIEPENVIVATITYQSFFRLYNRLAAVSGTALTESEEFLKIYNMVVVPVPTNRPNIRKDRSDSVFGTPQIKWMAVVKEIKKIHETSRPILIGTANIDDSELLHNLLLEANIPHEVLNAKNHSREAEIVTKAGQKNAVTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRAARQGDKGETKFFISLGDSLFKRFAHDKIERAISKLGNETFDSAFFSKMLSRTQKRVEAINFDTRKNLIDYDHVLASQRELIYKQRDKFLLANDLSEMIDKMLEKFVQQFCDQYRNQKNQNLINHIALAEALNLEMNMQNTINPKVFENMTFDVAVDKTRNLVAKKISDKVNVLTKPIALNRFRDIIITSMDKHWTEHLDSVFKLREGVVLRSMEHTSPLNVYIKETDILFKTMLQKIAQDVIVQIANLTTPDEFDHSLMQANALKKLAAIKADEKSNQE
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (1%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	XXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX-----------------------------------------------XXXXX---------------------------------------------------------------------------------------------X---------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
psipred	---HHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------------HHHHHHHHHHHHHHH----EEEEE-HHHHH--HHHHHHHHHH-------------HHHHHHHHH--EEE----HHHHHHHHHHHHHHHHH-------EEEEE---EEEE----HHHHH-------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------EEEEEE----------------HHHHHHHH-----------EEEEHHHHHHHHHHHH------HHHHHHHHHHH---EEE--------------HHHHHHHHHHHHHHHHHHHHH-----EEEEE--HHHHHHHHHHHHH-----EEE--HHHHHHHHHHHH------EEEE--HHH---------HHHHHH-------HH---HHHHHH--HH---------EEEEEE---HHHHH---HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EE------HHHHHHH-----------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.118
  max. Y    19	    0.234
  max. S    15	    0.571
  mean S     1-18   0.431
       D     1-18   0.311    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.311 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-806	alignment	3iqyA_105	1-802	0.8237	PROTEIN TRANSPORT

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	0.0	1-806	1-806	959	86	806	ref|YP_005175448.1|	Preprotein translocase subunit SecA [Mycoplasma pneumoniae 3...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	0.0	1-806	1-815	941	62	817	ref|YP_005880322.1|	protein translocase subunit secA [Mycoplasma gallisepticum s...
340047	Mycoplasma capricolum subsp. capricolum ATCC 27343	1 (0.03%)	1E-55	129-307	2-181	224	53	180	emb|CAA83755.1|	preprotein translocase SECA subunit [Mycoplasma capricolum s...
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	0.0	4-775	1-776	906	52	777	ref|WP_006688896.1|	preprotein translocase subunit SecA [Ureaplasma parvum] gb|E...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	0.0	4-775	1-776	905	52	777	ref|WP_006689263.1|	preprotein translocase subunit SecA [Ureaplasma parvum] gb|E...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	0.0	4-775	1-776	894	52	777	ref|WP_004025889.1|	preprotein translocase subunit SecA [Ureaplasma urealyticum]...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	0.0	4-775	1-776	894	52	777	ref|WP_004026286.1|	preprotein translocase subunit SecA [Ureaplasma urealyticum]...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	0.0	4-775	1-776	893	52	777	ref|YP_002284541.1|	preprotein translocase subunit SecA [Ureaplasma urealyticum ...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	0.0	4-775	1-776	892	52	777	ref|WP_004027500.1|	preprotein translocase subunit SecA [Ureaplasma urealyticum]...
47565	Candidatus Phytoplasma prunorum	1 (0.03%)	5E-53	217-377	1-161	216	52	161	gb|ABY48839.1|	SecA [German stone fruit yellows phytoplasma] gb|ABY48840.1|...
182216	Elm witches'-broom phytoplasma	1 (0.03%)	2E-54	217-377	1-161	221	51	161	gb|ABY48832.1|	SecA [Elm witches'-broom phytoplasma]
85647	Brinjal little leaf phytoplasma	1 (0.03%)	5E-54	217-377	1-161	219	51	161	gb|ABY48834.1|	SecA [Brinjal little leaf phytoplasma] gb|AFH88832.1| SecA, ...
488935	Cordyline phytoplasma	1 (0.03%)	9E-54	217-377	1-161	218	51	161	gb|ABY48842.1|	SecA [Cordyline phytoplasma]
488936	Pepper stolbur phytoplasma	1 (0.03%)	1E-53	217-377	1-161	218	51	161	gb|ABY48843.1|	SecA [Pepper Stolbur phytoplasma]
37701	Potato witches'-broom phytoplasma	1 (0.03%)	5E-53	217-377	1-161	216	51	161	gb|ABY48833.1|	SecA [Potato witches'-broom phytoplasma]
345343	Sugarcane grassy shoot phytoplasma	2 (0.06%)	2E-43	205-344	2-141	184	51	140	gb|ABE73471.1|	SecA [Sugarcane grassy shoot phytoplasma]
35770	Tomato big bud phytoplasma	1 (0.03%)	2E-19	205-289	4-88	105	51	85	gb|AAM28541.1|AF494511_1	SecA [Tomato big bud phytoplasma]
679196	Lactobacillus gasseri 224-1	1 (0.03%)	0.0	37-619	1-599	943	50	600	ref|WP_003654112.1|	helicase [Lactobacillus gasseri] gb|EFB63002.1| preprotein t...
591127	Chandigarh periwinkle phytoplasma	1 (0.03%)	1E-104	101-369	1-273	387	50	273	emb|CAX20741.1|	SeqA protein [Himachal periwinkle phytoplasma] emb|CAX20743....
591125	Toona witches'-broom phytoplasma	1 (0.03%)	1E-104	101-369	1-273	387	50	273	emb|CAX20742.1|	SeqA protein [Toona witches'-broom phytoplasma]