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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 .
	MIKNLVVIESPNKVKTLKQYLPSDEFEIVSTVGHIREMVYKNFGFDENTYTPIWEDWTKNKQKNPKQKHLLSKFEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLDQKDKAKCKRITFNEITKKAVVDALKQPRNIDLNWVESQFARQILDRMIGFRLSRLLNSYLQAKSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLNKENNQKVVCANKSIPLVLREINPELSASLKLDFEAAENVSGIDFLNEASATRFANQLTGEYEVYFIDEPKIYYSSPNPVYTTASLQKDAINKLGWSSKKVTMVAQRLYEGISVNGKQTALISYPRTDSIRISNQFQSECEKYIEKEFGSHYLADKNKLKRHKKDEKIIQDAHEGIHPTYITITPNDLKNGVKRDEFLLYRLIWIRTVASLMADAKTSRTIVRFINQKNKFYTSSKSLLFDGYQRLYEEIKPNTKDELYIDLSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTYNTMASVNLERGYANLVNRFFYITELGEKVNNELSKHFGNVINKEFTKKMEKSLDEIAENKVNYQEFLKQFWTNFKSDVKLAENSIQKVKKEKELVERDCPKCNQPLVYRYTKRGNEKFVGCSDFPKCKYSEFSNPKPKLTLETLDELCPECNNKLVKRRTKFNAKKTFIGCSNFPNCRFIKKDNAAEFKQ
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (3%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------
disordered (9%)	X-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXX-X-----------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------XXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X--XXXXX
psipred	---EEEEE--HHHHHHHHHH-----EEEEEE--HHH----------HHH-----------------------HHHHHHHHHHHHH---EEEE--------HHHHHHHHHHH-------EEEEEE----HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH------EEEEEEEEE-----EEE-------HHHHH--HHHHHH----HHHH--HHHHHHHHHHHHHHHHHHH----EEEEEE--EEEE--------HHHHHHHHHHH----HHHHHHHHHHHHHHH---------EE---HH-----HHHHHHHHHHHHHH--------HHHH----------------------------------HHHHHHHHHHHHHHHHHH-HHHHH-EEEEEEEE--EEEEEEEEEEEE---HHHH----------------------EEEEEEEEEEEEE--------HHHHHHHHH---------HHHHHHHHHH---EEEE--EEEE-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH------------------EEEEE------EEEE----------------------------------EEEEE-------EEEEE---------EE--------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    42	    0.108
  max. Y    15	    0.160
  max. S     6	    0.350
  mean S     1-14   0.252
       D     1-14   0.196    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.196 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-709	alignment	4rulA_301	1-821	0.8501	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662945	Mycoplasma genitalium M6320	1 (0.03%)	0.0	1-709	1-709	744	100	709	ref|YP_006600637.1|	DNA topoisomerase I [Mycoplasma genitalium M6320] ref|WP_014...
662947	Mycoplasma genitalium M2288	1 (0.03%)	0.0	1-709	1-709	743	100	709	ref|YP_006601137.1|	DNA topoisomerase I [Mycoplasma genitalium M2288] ref|WP_014...
722438	Mycoplasma pneumoniae FH	1 (0.03%)	0.0	1-705	1-711	692	71	714	ref|YP_005881285.1|	DNA topoisomerase I [Mycoplasma pneumoniae FH] ref|WP_014574...
2096	Mycoplasma gallisepticum	2 (0.05%)	1E-170	2-708	6-711	605	45	726	gb|AAF36767.1|	DNA topoisomerase I [Mycoplasma gallisepticum]
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	1E-169	1-709	5-676	600	40	709	ref|YP_001752675.1|	DNA topoisomerase I [Ureaplasma parvum serovar 3 str. ATCC 2...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-167	1-709	1-672	594	40	709	ref|WP_004026228.1|	DNA topoisomerase I [Ureaplasma urealyticum] gb|EDT49697.1| ...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	1E-167	1-709	1-672	594	40	709	ref|YP_002285045.1|	DNA topoisomerase I [Ureaplasma urealyticum serovar 10 str. ...
401526	Thermosinus carboxydivorans Nor1	1 (0.03%)	0.0	1-707	1-658	807	37	709	ref|WP_007288449.1|	DNA topoisomerase I [Thermosinus carboxydivorans] gb|EAX4867...
525280	Erysipelothrix rhusiopathiae ATCC 19414	1 (0.03%)	0.0	2-709	1-664	685	37	715	ref|WP_003773150.1|	DNA topoisomerase I [Erysipelothrix rhusiopathiae] gb|EFY093...
650150	Erysipelothrix rhusiopathiae str. Fujisawa	1 (0.03%)	0.0	2-705	1-660	685	37	711	ref|YP_004560614.1|	DNA topoisomerase I [Erysipelothrix rhusiopathiae str. Fujis...
391606	Carboxydibrachium pacificum DSM 12653	1 (0.03%)	1E-180	1-530	19-510	640	37	532	ref|WP_009611057.1|	DNA topoisomerase I, partial [Caldanaerobacter subterraneus]...
1136178	Geobacillus thermoglucosidans TNO-09.020	1 (0.03%)	0.0	1-704	1-655	821	36	707	ref|YP_003990004.1|	DNA topoisomerase I [Geobacillus sp. Y4.1MC1] ref|YP_0045886...
471223	Geobacillus sp. WCH70	1 (0.03%)	0.0	1-704	1-655	813	36	707	ref|YP_002949228.1|	DNA topoisomerase I [Geobacillus sp. WCH70] ref|WP_015863435...
81408	Geobacillus caldoxylosilyticus	1 (0.03%)	0.0	1-704	1-655	809	36	707	ref|WP_017437098.1|	DNA topoisomerase I [Geobacillus caldoxylosilyticus]
420246	Geobacillus thermodenitrificans NG80-2	2 (0.05%)	0.0	1-704	1-655	803	36	707	ref|YP_001125185.1|	DNA topoisomerase I [Geobacillus thermodenitrificans NG80-2]...
796606	Bacillus methanolicus MGA3	1 (0.03%)	0.0	1-706	1-657	802	36	708	ref|WP_003349030.1|	DNA topoisomerase I [Bacillus methanolicus] gb|EIJ79571.1| D...
1462	Geobacillus kaustophilus	1 (0.03%)	0.0	1-704	1-655	799	36	707	ref|WP_020278186.1|	DNA topoisomerase I [Geobacillus kaustophilus] dbj|GAD12148....
196180	Anoxybacillus kamchatkensis	1 (0.03%)	0.0	1-706	1-657	798	36	709	ref|WP_019418404.1|	DNA topoisomerase I [Anoxybacillus kamchatkensis]
1315967	Anoxybacillus flavithermus NBRC 109594	1 (0.03%)	0.0	1-704	2-656	797	36	707	ref|WP_006323034.1|	DNA topoisomerase I [Anoxybacillus flavithermus] dbj|GAC9204...
1267580	Anoxybacillus flavithermus TNO-09.006	1 (0.03%)	0.0	1-704	1-655	794	36	707	ref|WP_004891082.1|	DNA topoisomerase I [Anoxybacillus flavithermus] gb|ELK21678...