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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 . 930 . 940 . 950 . 960 . 970 . 980 . 990 . 1000 . 1010 . 1020 . 1030 . 1040 . 1050 . 1060 . 1070 . 1080 . 1090 . 1100 . 1110 . 1120 . 1130 . 1140 . 1150 . 1160 . 1170 . 1180 . 1190 . 1200 . 1210 . 1220 . 1230 . 1240 . 1250 . 1260 . 1270 . 1280 . 1290
	MTTTRRNKRNNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQKMRRVIGYIFRNLIKSKSSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDLNLEFSRLNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHTVPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKRLLQESVDALFDNSSRHKPSLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKPFIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFSTVYEARAAYESQKVHLHAIVGISTKAFPNKKFACQGTLITTVGKIIFNDVLGNNVPYINDGEFDENACPEKFIVKQGEDVRQSILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPKTLDNIKALGFKYSTFSSTTVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERYKRVVKLWNNVKEKVSDEIQNLIKQEQYRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAIVETKTKSLIESLFDRIVNRYSITPIVDPETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGKLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFEKAVISEVKGTVKSITTVQNAQEVVIKSNVDERIYTIPFSAQIRVHVGDQVSPGSKITEGSVDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIRQLTNLLQVTDAGNSNLFVGQLVHSHYLNELNKSLLLAGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAAVKNQVDYLLGLKENVIIGGKIPAGTGFLTDEELTFLGSKTVAEEY
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)	-XXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------XXXXXXXXXXXXX--------------------------------XXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------XXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (3%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	XXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX
psipred	---HH-------------EEEEE---HHHHHHHEEEEE----EE---------------HH-------EE---------------------------------EEEE---EEEEEEE-----HHHHHHHH---HHHHHH--EE--EEEE-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH------HHHHHHHH----------HHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---------HHEEEEE-----------EEE---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----------------HHHHHHH--------------EE------EE-------EE----HHHHHHHH---EEEHHHHHHHHH-----------HHHHHHHHHH---HHHHHHHHHH---EEEE----HHHH------EEEE----EEEE------------------EE----HHHHHHHHHHH-----EEE--------------EEEEEEEE----------EEE--HHHHHHHHH--------EEEEEE------------EEEE---HHHHHHH----------------------EE----EEEEEE---------------HHHHHHE----HHHHHHHHHHHHHHHHHHHHH---EEEE------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEE------HHHHHHHHHHH-----------------------HHHHHHHH------EEEEEE--HHHHHHHHHHHHHH--HHHHHHHHHHHEEEEEE---------EEEEE-----------HHHHEEE-------EE----EEEEE------HHHHHHHHH-------EE------------EEEEEE-HH------------HHHHHH------EE-EEEEE------HHHHH----EEE--EEEE----------------EEEEEE----EEEEE-----EEEEEE----EEEEEEHHHH----EEEE-------------HHHHEEEEEEEEEEEEEEEEEEE---EEEEHHHHH--EEEEEE----------EEEHHHHHHHHHHHHH---------EEEEE-----------HHH--HHHHHHHHHHHHH----------HHHEEE-----------EE--EEE----------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    41	    0.107
  max. Y    18	    0.252
  max. S    14	    0.798
  mean S     1-17   0.568
       D     1-17   0.401    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.401 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-1292	alignment	5nwtD_202	1-1358	0.6809	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
663918	Mycoplasma genitalium M2321	1 (0.03%)	0.0	1-1292	1-1292	1391	100	1292	ref|YP_006599890.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
662946	Mycoplasma genitalium M6282	1 (0.03%)	0.0	1-1292	1-1292	1388	100	1292	ref|YP_006600375.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
662945	Mycoplasma genitalium M6320	1 (0.03%)	0.0	1-1292	1-1292	1388	100	1292	ref|YP_006600880.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
488339	synthetic Mycoplasma genitalium JCVI-1.0	1 (0.03%)	0.0	1-1292	1-1292	1387	100	1292	ref|NP_073010.2|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
662947	Mycoplasma genitalium M2288	1 (0.03%)	0.0	1-1292	1-1292	1387	100	1292	ref|YP_006601383.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
2097	Mycoplasma genitalium	1 (0.03%)	0.0	1-1241	1-1241	1318	100	1241	ref|WP_009885797.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma genita...
2104	Mycoplasma pneumoniae	1 (0.03%)	0.0	19-1292	17-1290	1367	93	1274	ref|WP_017532897.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumo...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	0.0	19-1292	17-1290	1364	93	1274	ref|YP_005175756.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumo...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	0.0	19-1292	17-1290	1363	93	1274	ref|NP_110203.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumo...
722438	Mycoplasma pneumoniae FH	1 (0.03%)	0.0	19-1292	17-1290	1364	92	1274	ref|YP_005881515.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma pneumo...
1159204	Mycoplasma gallisepticum NC08_2008.031-4-3P	1 (0.03%)	0.0	16-1292	12-1286	1286	63	1280	ref|NP_852996.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma gallis...
1159202	Mycoplasma gallisepticum NC06_2006.080-5-2P	1 (0.03%)	0.0	16-1292	12-1286	1286	63	1280	ref|YP_006584896.1|	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta...
1006581	Mycoplasma gallisepticum S6	1 (0.03%)	0.0	16-1292	12-1286	1285	63	1280	ref|YP_005880894.1|	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta...
1159203	Mycoplasma gallisepticum CA06_2006.052-5-2P	1 (0.03%)	0.0	16-1292	12-1286	1284	62	1280	ref|YP_006585638.1|	DNA-directed RNA polymerase subunit beta' (RNAP subunit beta...
1048830	Mycoplasma iowae 695	1 (0.03%)	0.0	16-1292	6-1280	1280	62	1282	ref|WP_004024768.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma iowae]...
272633	Mycoplasma penetrans HF-2	1 (0.03%)	0.0	11-1292	2-1288	1279	60	1292	ref|NP_757466.1|	DNA-directed RNA polymerase subunit beta' [Mycoplasma penetr...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	0.0	15-1292	4-1305	1201	57	1307	ref|WP_004026268.1|	DNA-directed RNA polymerase subunit beta' [Ureaplasma urealy...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	0.0	15-1292	4-1305	1200	57	1307	ref|YP_002284584.1|	DNA-directed RNA polymerase subunit beta' [Ureaplasma urealy...
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	0.0	15-1292	4-1305	1199	57	1307	ref|WP_006688919.1|	DNA-directed RNA polymerase subunit beta' [Ureaplasma parvum...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	0.0	15-1292	4-1305	1199	57	1307	ref|WP_006689178.1|	DNA-directed RNA polymerase subunit beta' [Ureaplasma parvum...