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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720
	MKVLTELQKQIFTIVKKENGKPIPPGIVVRMMENSPNFPGKHLIYRAIDDLLDWAILRKAGGVTNQLLVNYEPAEPLLDKKLQGILTLGNKNSGFIRSLDDDKTVYYVHYSNLTGALDGDLVEFCKLDKPQFGDKFDAAVITILKRARILYAGNFLVDQNEFALEYKIVADNPRFYLTMIVNPDSIPNNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFETNDVVEQHANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFVLYVAIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCEISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDLIQAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHDKAETMIENLMVVANETVAWVLTNNKIALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEIFVILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIHRLLWMHLFTPDQFTDNERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLSKQIGKTFSGFISAITSFGIFMRMDENNFDGLIKITTIPDDFFIFEKEKMVLKGRKTNKVYKIGDRLEAKLSEIDFIQKRAILTLI
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------
disordered (4%)	XXXXX----------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------X---X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXX-XX---------------------------------------------------------------------------------------------------------------------------
psipred	--HHHHHHHHHHHHHHH-------HHHHHHHH-----HHHHHHHHHHHHHHHH---HHHH--------------------EEEEEEEEE----EEEEE------EEEE-HHHHHH-----EEEEEE------------EEEEEEE-----EEEEEEEE-----EEEEEEE------------HHH---------EEEEE--------------EEEEEE-----HHHHHHHHHH-----HHHHHHHHHHH---------------------EEEEE------HH-EEEEEE----EEEEEEE--HHH------HHHHHHHH---EEE-----------HHHH----EEE---EEE-EEEEEEE-----EEEEEE--EEEEEE----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----------EEEEE-----EEEEEE----HHHHHHHHHHHHHHHHHHHHHHH----EEEEE-----HHHHHHHHHHHHH--------------HHHHHHHHHHHH--HHHHHHHHHHHH-----EE------HHH------------HHEHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEE-EEEEEEEE-EEEEEEEE---------------EEEEEE----EE----EEEEEEEEEE----EEEEEE-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    32	    0.106
  max. Y    18	    0.148
  max. S    12	    0.241
  mean S     1-17   0.195
       D     1-17   0.166    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.166 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-725	alignment	6d6qK_307	1-853	0.8434	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	1E-173	1-725	1-726	616	75	726	ref|YP_005175481.1|	ribonuclease R [Mycoplasma pneumoniae 309] ref|YP_005881267....
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-144	11-724	14-717	518	36	720	ref|YP_005880650.1|	exoribonuclease R (VacB) [Mycoplasma gallisepticum str. F] r...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	1E-144	11-724	14-717	518	36	720	ref|NP_853240.2|	exoribonuclease R [Mycoplasma gallisepticum str. R(low)] ref...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	1E-154	4-725	1-719	552	33	735	ref|WP_004026421.1|	ribonuclease R [Ureaplasma urealyticum] gb|EDX53249.1| ribon...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	1E-154	4-725	1-719	552	33	735	ref|YP_002284476.1|	ribonuclease R [Ureaplasma urealyticum serovar 10 str. ATCC ...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	1E-154	4-725	1-719	552	33	735	ref|WP_004026190.1|	ribonuclease R [Ureaplasma urealyticum] gb|EDT49535.1| ribon...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-154	4-725	1-719	551	33	735	ref|WP_004027352.1|	ribonuclease R [Ureaplasma urealyticum] gb|EEH02041.1| ribon...
550773	Ureaplasma urealyticum serovar 9 str. ATCC 33175	1 (0.03%)	1E-152	4-725	1-719	547	33	734	ref|WP_004026747.1|	ribonuclease R [Ureaplasma urealyticum] gb|EDX54121.1| ribon...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	1E-149	8-725	6-719	534	32	730	ref|WP_006689298.1|	ribonuclease R [Ureaplasma parvum] gb|EDT49156.1| ribonuclea...
665958	Bacillus sp. BT1B_CT2	1 (0.03%)	1E-175	209-725	2-517	620	31	520	ref|WP_009329605.1|	ribonuclease R [Bacillus sp. BT1B_CT2] gb|EFV70954.1| rnr pr...
535205	Enterococcus faecium E1071	1 (0.03%)	1E-169	197-725	2-529	602	30	534	ref|WP_002295001.1|	ribonuclease R [Enterococcus faecium] gb|EFF20525.1| ribonuc...
702452	Listeria seeligeri FSL S4-171	1 (0.03%)	1E-169	189-724	12-546	601	30	539	gb|EFS02190.1|	ribonuclease R [Listeria seeligeri FSL S4-171]
2133	Spiroplasma citri	1 (0.03%)	1E-166	7-725	1-704	593	30	725	emb|CAK98410.1|	probable ribonuclease r protein [Spiroplasma citri]
401526	Thermosinus carboxydivorans Nor1	2 (0.05%)	1E-106	333-704	25-394	392	30	374	ref|WP_007290047.1|	Exoribonuclease II [Thermosinus carboxydivorans] gb|EAX46924...
422288	Beggiatoa sp. SS	1 (0.03%)	2E-79	180-446	1-266	304	30	267	gb|EDN72187.1|	ribonuclease R [Beggiatoa sp. SS]
388384	Pseudoalteromonas sp. BSi20652	1 (0.03%)	0.0	8-724	22-720	726	29	719	ref|WP_008167945.1|	ribonuclease R [Pseudoalteromonas sp. BSi20652] dbj|GAA59561...
388400	Bacillus sp. B14905	1 (0.03%)	0.0	101-725	2-619	710	29	628	ref|WP_008181259.1|	ribonuclease R, partial [Bacillus sp. B14905] gb|EAZ83608.1|...
525327	Lactobacillus hilgardii ATCC 8290	1 (0.03%)	0.0	3-725	2-714	694	29	730	ref|WP_004561696.1|	exoribonuclease R [Lactobacillus hilgardii] gb|EEI23355.1| r...
525318	Lactobacillus buchneri ATCC 11577	1 (0.03%)	0.0	3-725	2-714	694	29	730	ref|WP_003560927.1|	exoribonuclease R [Lactobacillus buchneri] gb|EEI18469.1| ri...
883113	Facklamia languida CCUG 37842	1 (0.03%)	0.0	4-725	3-718	693	29	733	ref|WP_006308331.1|	ribonuclease R [Facklamia languida] gb|EHR37753.1| ribonucle...