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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 . 930 . 940 . 950 . 960 . 970 . 980 . 990 . 1000 . 1010 . 1020 . 1030 . 1040 . 1050 . 1060 . 1070 . 1080 . 1090 . 1100 . 1110 . 1120 . 1130 . 1140 . 1150 . 1160 . 1170 . 1180 . 1190 . 1200 . 1210 . 1220 . 1230 . 1240 . 1250 . 1260 . 1270 . 1280 . 1290 . 1300 . 1310 . 1320 . 1330 . 1340 . 1350 . 1360 . 1370 . 1380 .
	MSQKSNFFQKRYSPTATRRYYGKIETNFIQPNLADIQIKSYQKFLDHDLEKLIASYFPIKSPNDRYTINFRGLHRTEPERDEAQSRAQSKTYEVGIYADLELVDNDKGTVKKARKSKKNIASNTNGVFLASMPLITHDGVFIINGIEKFVISQITRSPGIYMLTKSQLKLSNSRKRVQEGYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGLNNREILKIFKNNEFIKRSLEAEIYNAKDFLSNVDPEIKNLLKEFRDGKTDLRRKGIASDQKLRSLVNEYVTLEKQYNALKQTSPNDSSLTALELEMENKMDSVITERAAKHIVNELSISLRDIENTEECHEVSFHALLCARFFRNKRYNLSNAGRYKVSRKLRLTERIYQKTLACDLFLKDGKLLLKKGTLLLKEEIDKIKQAAKNNEISFVNKMQLTTDGKAVDLAKESLFYETIDVYITNDNLSVSVPVIGIHNENDLNKAMTLSDFIASISYVINLPYGIGKYDDIDHLGNKRVKLINELITAKLESGFTRMERFLKEKLTIADGVNRGQQINEEGQVIEQGEKKELTIKSLINSKPIQIVIKDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKAGVITDEVEYLTALREDEHIIAEISSLVNISNDNKILDKEIIGRYRSMQGLYDPLKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNMQRQAYPLIKPYAPAVGTGQEHKIASDSGLTMSSPCSGVVSYVDNSKIIITSDSSKKETVNLVKFERSNQNTCYNHKPIVEIGQRVNKDEIIVDGPAVNKSELALGQNVLVAFTTWNGYNYEDAIVISERLVKEDILTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKVSHGGDGIVSAVKRFSIANGDELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPIEDMPHLEDGTPVDILLNPLGVPSRMNIGQIFETHLGYAAHKLAVRSLISSCFDQNKAKEFAIEINQPQARVERLIKGLKNQINDRNIKSEKEALEKLDNSDISLVLKEIGMSFDDLIYKIATPIFQGVNFLDLQDVMQEAGLDPQKNQGKFKLIDGRSGMPFERPISLGIMYMMKLNHMVDDKIHARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNRAYAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQSDGEQDEFFNDFEFDTEGY
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX--
coiled-coils (2%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	XXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXX-------XXXXXX
psipred	--------------------------------HHHHHHHHHHHHHHHHHHHHHHH---EE-----EEEEEEEEEE------HHHHHH--------EEEEEEEEEE------------------EEEEEE-----------EEE---EEEEEEEEE----EEEE-----------------EEEEEEE-----EEEEE-----EEEEEEEEEEEEEE--------HHHHHHHH---HHHHHHH-----EEEE-HHHHHH----------HHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHH-----HHEE---HHHHHHH------------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH------EE-------EEEEEEEE---------------EEEEEE----------HHHHHHHHHHHH-----EEEE------HHHHHH----EE----EEEE-------------------------HHHHHHHHHHHHHHH---------------EE--HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHH---HHHHHHHHHHH----HHHHHH---HHHHHH----EE-------------------------EE---------EEEEE-----EE-----EEEE--EEEEE-------EEE--HHHH---EEEE------------EE--EEEEEE----EEE-HHH-EEEE---HH----------------------HHHHHH-------------------HHHHH-----------EEEEEE--EEEEE-----EEEEEE-EEEE-------EEE-------EE----EEEE-------EE----EEEEEEEE---------HHHHHHHHH-------EEEEEEEEEEE-----EEEE-------HHHHHH------EEE--EE----EEEEE----------HHHHHHHHHH-------EE---------EEEEEEEEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---EEEEE---HHH--------EEEEEE----HHHHHHHHHHHHHHHHHHHHH----EEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH--HHHHHHHHHHH-HHHH----EEEEE------HHHHHHHHHH-----------EEEE------EE--EEEEEEEHHHHH------EEEE--------EE----------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------------HHHHHHHHHH----EEEE---------------------HHHH----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    37	    0.133
  max. Y     5	    0.179
  max. S     3	    0.349
  mean S     1-4    0.330
       D     1-4    0.238    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.238 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-1390	alignment	5uh5C_301	1-1126	0.6042	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662945	Mycoplasma genitalium M6320	1 (0.03%)	0.0	1-1390	1-1390	1384	100	1390	ref|YP_006600881.1|	DNA-directed RNA polymerase subunit beta [Mycoplasma genital...
662947	Mycoplasma genitalium M2288	1 (0.03%)	0.0	1-1390	1-1390	1384	100	1390	ref|YP_006599891.1|	DNA-directed RNA polymerase subunit beta [Mycoplasma genital...
488339	synthetic Mycoplasma genitalium JCVI-1.0	1 (0.03%)	0.0	1-1390	1-1390	1381	100	1390	ref|NP_073011.1|	DNA-directed RNA polymerase subunit beta [Mycoplasma genital...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	0.0	1-1390	1-1391	1337	86	1391	ref|YP_005175757.1|	DNA-directed RNA polymerase subunit beta [Mycoplasma pneumon...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	0.0	1-1390	1-1391	1335	86	1391	ref|NP_110204.1|	DNA-directed RNA polymerase subunit beta [Mycoplasma pneumon...
2122	Mycoplasma pirum	1 (0.03%)	0.0	545-1290	3-750	808	68	748	gb|ABF60573.1|	RNA polymerase beta subunit [Mycoplasma pirum]
29560	Mycoplasma imitans	1 (0.03%)	0.0	615-1284	1-670	736	68	670	gb|AAY83285.1|	RNA polymerase beta subunit [Mycoplasma imitans]
33924	Mycoplasma testudinis	1 (0.03%)	0.0	528-1286	1-760	814	67	760	gb|ACI42997.1|	RNA polymerase beta subunit [Mycoplasma testudinis]
78580	Mycoplasma alvi	1 (0.03%)	0.0	528-1286	1-761	811	67	761	gb|ACM43497.1|	RNA polymerase beta subunit [Mycoplasma alvi]
572419	Mycoplasma amphoriforme A39	1 (0.03%)	0.0	528-1286	1-760	803	67	760	gb|ACI42996.1|	RNA polymerase beta subunit [Mycoplasma amphoriforme A39]
92757	Mycoplasma cavipharyngis	1 (0.03%)	0.0	615-1284	1-668	709	62	671	gb|AAZ81436.1|	RNA polymerase beta subunit [Mycoplasma cavipharyngis]
38746	Mycoplasma microti	1 (0.03%)	0.0	630-1286	1-661	693	61	665	gb|ACQ42251.1|	RNA polymerase beta subunit [Mycoplasma microti]
386460	Mycoplasma insons	1 (0.03%)	0.0	527-1286	1-751	801	60	761	gb|ACI42993.1|	RNA polymerase beta subunit [Mycoplasma insons]
375476	Exiguobacterium sp. M37	1 (0.03%)	1E-117	787-1117	1-339	430	58	339	gb|ABF82548.1|	DNA-directed RNA polymerase III [Exiguobacterium sp. M37]
383715	Exiguobacterium sp. Colorado Road	1 (0.03%)	1E-116	787-1116	1-338	428	58	338	gb|ABF82544.1|	DNA-directed RNA polymerase III [Exiguobacterium sp. Colorad...
375475	Exiguobacterium sp. AT4	1 (0.03%)	1E-116	787-1116	1-338	428	58	338	gb|ABF82543.1|	DNA-directed RNA polymerase III [Exiguobacterium sp. AT4]
313382	Spiroplasma penaei	1 (0.03%)	1E-160	623-1116	1-490	574	57	494	gb|ACC93944.1|	RNA polymerase beta subunit, partial [Spiroplasma penaei]
383716	Exiguobacterium sp. Glc31or	1 (0.03%)	1E-117	782-1114	1-341	431	57	341	gb|ABF82545.1|	DNA-directed RNA polymerase III [Exiguobacterium sp. Glc31or...
383713	Exiguobacterium sp. India Orange	1 (0.03%)	1E-117	787-1119	2-342	431	57	341	gb|ABF82538.1|	DNA-directed RNA polymerase III [Exiguobacterium sp. India O...
1159200	Mycoplasma gallisepticum NY01_2001.047-5-1P	1 (0.03%)	0.0	1-1384	1-1378	1212	56	1388	ref|YP_006583395.1|	DNA-directed RNA polymerase subunit beta (RNAP subunit beta)...