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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 .
	MNWTTDKVRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSKRLVNAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDPKRFYITVYEDDETTYKRWIKHKIDKNHIIKCDKSRNFWDLGLGPCGPCTEIYYDRGEKFDPKKIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVLQNSPTNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTISEGVLPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNETVKQVVLKEINAFNKTIDLGLVLFEKSVKNNTLTPQLTFQLNETYGFPVEIIRELVNQKGLTIDWTVFDQLMAKHRSISKQNNQTINFEKQNINLVNFKTKSTFFYHKNKINAKVIGLFDENYLPVKELNNQSGYVVFDQTVLYATSGGQRYDEGSCINHSNNNDQKISFQGVFKGPNKQHFHYFLVGSFKLNDQVTLSHDETWRKLAANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATIDFNLNRHLTRNELEKVENKIRSLIKQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILRVIRFGDYSVELCGGTHVANTASIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQKLIQLKSELEKVLSLIDSSIFKVELKELQQRLDKFILPEKITQLRDASDTLLALKNDINQLKTKNYKVSQQALALSIKKQLLSLVDENKSYVIATFNDVEPKLLLQTLHDVFNQNQTKNFLIINQFNESNSFIVIGNKTTTIIEKLRNSFNLKGGGNDKLFRGSFQDNVTPQKLNELFQNK
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	-----------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (7%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX----------------------------XXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------
disordered (4%)	XXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX-----XX
psipred	----HHHHHHHHHHHHHH---EEE------------EEEE--HHHHHHHHH-----------------EEEE-EEE------EEEEEEE----------HHHHHHHHHHHHHHHH---HHHEEEEE----HHHHHHEEE----HHHEEE-------------------EEEE------------------------EEEEE-HHHHHH--------------EEE----HHHHHHHH-----------HHHHHHHHHHHH---------------------EEEEE----EEEEEEE-------------HHHHHHHHHHHHHHHH--------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEEEEE------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHH------EEEEE----------EEEE--EEEEEEE---EEEEEEE-----------------EEEE----EEEEEEEEEEE---EEEEEEE---------EEEEEE-HHHHHHHHH---HHHHHHHHHHHHH----EE---------EEEEEE------HHHHHHHHHHHHHHHHH----EEEEE-HHHHHH----------------EEEEEE-----------------EEEEEEEEEEEEE----EEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEEE-----HHHHHHHHHHHHHH----EEEEEEEE---EEEEEEEE-HHHHHHHHHHH--------HH-EEE-------HHHHHHHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    48	    0.112
  max. Y    40	    0.136
  max. S    36	    0.214
  mean S     1-39   0.135
       D     1-39   0.136    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.136 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-900	alignment	3wqyA_201	1-905	0.6554	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
543302	Alicyclobacillus acidocaldarius LAA1	1 (0.03%)	8E-92	2-212	3-210	345	48	212	ref|WP_008341383.1|	alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius] gb|...
446	Legionella pneumophila	1 (0.03%)	3E-61	3-140	1-142	244	44	142	emb|CAC33486.1|	alanyl-tRNA synthetase [Legionella pneumophila]
406560	Streptococcus pneumoniae SP14-BS69	2 (0.05%)	1E-175	2-447	3-447	623	43	457	ref|WP_001811033.1|	alanyl-tRNA synthetase [Streptococcus pneumoniae] gb|EDK6605...
545696	Holdemania filiformis DSM 12042	2 (0.05%)	1E-172	2-472	45-514	613	43	483	ref|WP_006060681.1|	hypothetical protein, partial [Holdemania filiformis] gb|EEF...
6945	Ixodes scapularis	3 (0.08%)	4E-80	2-204	3-207	306	42	209	ref|XP_002401683.1|	alanyl-tRNA synthetase, putative [Ixodes scapularis] gb|EEC1...
382	Sinorhizobium meliloti	1 (0.03%)	8E-80	5-200	4-201	305	42	202	emb|CAA42581.1|	alanyl-tRNA synthetase [Sinorhizobium meliloti]
186741	uncultured Geobacter sp.	3 (0.08%)	3E-71	43-210	1-171	277	42	174	gb|ABR01063.1|	AlaS, partial [uncultured Geobacter sp.]
6182	Schistosoma japonicum	1 (0.03%)	5E-37	2-106	4-117	163	41	114	gb|AAW24516.1|	SJCHGC03396 protein [Schistosoma japonicum]
766747	synthetic Mycoplasma mycoides JCVI-syn1.0	1 (0.03%)	0.0	2-883	3-892	873	40	901	gb|ACU78384.1|	alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. ...
550773	Ureaplasma urealyticum serovar 9 str. ATCC 33175	1 (0.03%)	0.0	1-899	2-901	843	40	914	ref|WP_004026861.1|	alanyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX53688....
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	0.0	1-899	2-901	842	40	914	ref|YP_002284771.1|	alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 st...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	0.0	1-899	2-901	842	40	914	ref|WP_004025644.1|	alanyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDU56845....
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	0.0	1-899	2-901	842	40	914	ref|WP_004027389.1|	alanyl-tRNA synthetase [Ureaplasma urealyticum] gb|EEH02134....
518603	Ureaplasma urealyticum serovar 5 str. ATCC 27817	1 (0.03%)	0.0	1-899	2-901	841	40	914	ref|WP_004026943.1|	alanyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDU06296....
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	0.0	1-899	2-901	837	40	914	ref|WP_006688539.1|	alanyl-tRNA synthetase [Ureaplasma parvum] gb|EDU19201.1| al...
262722	Mycoplasma hyopneumoniae 7448	1 (0.03%)	0.0	2-897	3-876	791	39	904	sp|Q4A8G4.2|SYA_MYCH7	RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRN...
45361	Mycoplasma conjunctivae	1 (0.03%)	0.0	2-897	4-882	816	38	904	ref|YP_002960818.1|	alanyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581] ref...
243272	Mycoplasma arthritidis 158L3-1	1 (0.03%)	0.0	3-858	2-837	789	38	862	ref|YP_001999825.1|	alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1] ref|...
262719	Mycoplasma hyopneumoniae J	1 (0.03%)	0.0	2-897	3-876	788	38	904	sp|Q4AAD3.2|SYA_MYCHJ	RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRN...
2133	Spiroplasma citri	1 (0.03%)	0.0	2-889	3-900	900	37	907	emb|CAK99318.1|	probable alanyl-trna synthetase protein [Spiroplasma citri]