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Job 85131 [SSGCID - MygeA.20158.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG (MG_379) - BATCH:85100

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MSFIITVIGAGHAGLEAAFIVSKFNIKVNLLVLDINHLGSCPCNPSIGGPAKGIVTREIDVLGGMQAIAADNNALQYKLLNSSKGPAVQAIRAQIDKIGYKNWFQSQVKLNKNINLIQSEAINLIVRNEKIKGVILKDGSELLSDAVIITTGTYLRSKTYCGNTVKNQGPDQSKNSEKLSTNLINRGFKTIRLKTGTPPRILKTSLDYNQMELEINNNQNLAFSTTNKNFLPLEKQIPCYLVHTNQKIHDLILKNLKKSAMFNGSISAQGPLYCPSIEDKVFKFSQKPRHQIFVEPESLSLDTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIENLYFAGQINGTSGYEEAAGQGLMAGINAALKLLKKPPFILQRNEAYIGVMINDLVTKTISDPYRLLTSRAEYRLWLRNDNVQERLIKKSFELGLTDKKTYELFLKKEKKKQELISFLKNTQVGKVKALKFTNKNTAQSLYDFNKRSEINLDKLIKDLPEKYQLDSETLKQIEIEIKYEGYIKKNEKYFKGLDKLSKIKIPHTFDYHKVKNLASEAIFKLSNFKPSNLAIASQIAGVNFNDIIAIKHFLKTYE
tmhmm (0)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX---------------------------------------------------------XXXXXXXXXXXXXXXXX-----------------------------------------------------------------
coiled-coils (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (4%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX-------------------------------------------------------X-------------------------------------------------------------X
psipred
----EEEE---HHHHHHHHHHHH----EEEEE-----EEEE----------HHHHHHHHHH----EEEE-------HHH-----------HHHHHHHHHHHHHHHHHH-----EEEEEEEEEEEE----EEEEEE------------EE--------HHHHHHHHH-------HHHHHHHHHHHHH--HHEEE------EEE-----HHH--EE-----------------------EEHHHHH-------HHH----------------------------------EEEEEE--------EEEE--------HHHHHHHHH-------EEEE-----EEEEEE-HHH------------EEE---------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-------------------------HHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------HHHHH------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHHHHHHHH-

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    18	    0.233
  max. Y    18	    0.288
  max. S    13	    0.508
  mean S     1-17   0.337
       D     1-17   0.314    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.314 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-612     alignment     2zxhA_101     1-603   0.9436   FAD-BINDING PROTEIN


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
2096Mycoplasma gallisepticum1 (0.03%)0.06-6105-60971656606gb|AAF36757.1|glucose inhibited division protein A [Mycoplasma galliseptic...
626095Ureaplasma urealyticum serovar 8 str. ATCC 276181 (0.03%)0.02-6123-61275753611ref|YP_002284456.1|tRNA uridine 5-carboxymethylaminomethyl modification enzyme ...
626096Ureaplasma urealyticum serovar 2 str. ATCC 278141 (0.03%)0.02-6123-61275653611ref|WP_004027453.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
515609Ureaplasma parvum serovar 14 str. ATCC 336971 (0.03%)0.02-6123-61275653611ref|WP_006689091.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
519851Ureaplasma parvum serovar 6 str. ATCC 278181 (0.03%)0.02-6123-61275453611ref|WP_006688728.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
550773Ureaplasma urealyticum serovar 9 str. ATCC 331751 (0.03%)0.02-6123-61275952611ref|WP_004026735.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
59748Candidatus Phytoplasma australiense1 (0.03%)0.01-6081-60778449611ref|YP_001799227.1|tRNA uridine 5-carboxymethylaminomethyl modification enzyme ...
101513Sweet potato little leaf phytoplasma1 (0.03%)0.03-58933-62072648591gb|AAR88089.1|glucose inhibited division protein A [Sweet potato little le...
1033810Haloplasma contractile SSD-17B1 (0.03%)0.03-6112-61988647618ref|WP_008824870.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
665941Coprobacillus sp. 3_3_56FAA1 (0.03%)0.03-6102-61586547615ref|WP_003535126.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
428127Eubacterium dolichum DSM 39912 (0.06%)0.04-6123-61682947616ref|WP_004800721.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
37692Candidatus Phytoplasma mali1 (0.03%)0.01-6111-61580047618ref|YP_002004177.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
2133Spiroplasma citri5 (0.14%)0.02-6123-62179147619emb|CAK98511.1|probable glucose inhibited division protein a [Spiroplasma c...
496833Mycoplasma fermentans PG181 (0.03%)0.02-61013-61374647611ref|YP_007761803.1|hypothetical protein [Mycoplasma fermentans PG18] ref|WP_015...
428126Clostridium spiroforme DSM 15522 (0.06%)0.03-6102-61584646615ref|WP_004610730.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
45361Mycoplasma conjunctivae1 (0.03%)0.02-6096-60475046609ref|YP_002960527.1|tRNA uridine 5-carboxymethylaminomethyl modification enzyme ...
262719Mycoplasma hyopneumoniae J1 (0.03%)0.01-60910-60973646610sp|Q4AAU6.2|MNMG_MYCHJRecName: Full=tRNA uridine 5-carboxymethylaminomethyl modifi...
262722Mycoplasma hyopneumoniae 74481 (0.03%)0.01-60910-60973646610sp|Q4A909.2|MNMG_MYCH7RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modifi...
796606Bacillus methanolicus MGA31 (0.03%)0.02-6117-62196245617ref|WP_003347078.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...
977905Bacillus sp. 173761 (0.03%)0.02-6117-62194145617ref|WP_023613374.1|tRNA uridine 5-carboxymethylaminomethyl modification protein...






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