old.robetta.org

A new Robetta server is available for structure prediction.
     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 85132 [SSGCID - MygeA.20183.a] [2018-08-03] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] DNA polymerase III subunit gamma/tau (MG_419) - BATCH:85100

Features and Secondary Structure  
  
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590
  
MHQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKVYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTFNIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNINVLDSTEKTMIETLNFEKQHYAFLIKAIEENTNFGLSQLTLIDRLKAIVISYNEFFNQKPLTISSPSNEKSLHLETEYLEKKKIKKSNHKQDQKHFSLFEKSFIDKSEKTPKNDEVTNNKFLDTSKLNLANIALAINAFNDNKWINHFQNLLSVFQTKFNDKDKQNNLSYFNNFIDKYSARDIVKATKIVKASSFGIVILFEDQKIAMRLWKEAIEEGNVQATIFQIFNQNLFLASFSEHQYKTTITEETKNQKYQTEVLNLTQLENLAKPFLKEKKRSLSQKMVDKYFKGLFEEK
tmhmm (0) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (19%) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------X
psipred 
--HHHHHHH----HHHH--HHHHHHHHHHHHH-----EEEEEE------HHHHHHHHHHHH-------------HHHHHHHH------EEEEE------HHHHHHHHHHHHHHHH----EEEEE--HHH--HHHHHHHHHHH------EEEEEE---HHH-HHHHHHHHHEEE-----HHHHHHHHHHHHHH------HHHHHHHHHH----HHHHHHHHHHHHH--------HHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------HHHH---------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----------EEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    55	    0.104
  max. Y     3	    0.147
  max. S     2	    0.253
  mean S     1-2    0.235
       D     1-2    0.189    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.189 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-411     alignment     3glfB_301     1-364   0.840200   Transferase/DNA
  412-493     alignment     m621A_301     1-100   0.1589   --
  494-597     alignment     4fwvA_106     1-340   0.095200   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-411     alignment     3glfB_301     1-364   0.840200   Transferase/DNA
  412-493     cutpref     --     --   0.000000   --
  494-597     msa     4fwvA_106     1-340   0.095200   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662946Mycoplasma genitalium M62821 (0.03%)1E-1361-5971-597490100597ref|YP_006600451.1|DNA polymerase III subunits gamma/tau [Mycoplasma genitalium...
662947Mycoplasma genitalium M22881 (0.03%)1E-1351-5971-597490100597ref|YP_006601465.1|DNA polymerase III subunits gamma/tau [Mycoplasma genitalium...
663918Mycoplasma genitalium M23211 (0.03%)1E-1361-5971-597490100597ref|NP_073090.2|DNA polymerase III subunits gamma/tau [Mycoplasma genitalium...
662945Mycoplasma genitalium M63201 (0.03%)1E-1341-5971-59748599597ref|YP_006600960.1|DNA polymerase III subunits gamma/tau [Mycoplasma genitalium...
406559Streptococcus pneumoniae SP11-BS701 (0.03%)4E-301-861-861394786ref|WP_001810385.1|DNA polymerase III, gamma and tau subunits [Streptococcus pn...
1112856Mycoplasma pneumoniae 3091 (0.03%)2E-861-5971-68132742682ref|YP_005175868.1|DNA polymerase III subunit gamma and tau [Mycoplasma pneumon...
7460Apis mellifera3 (0.07%)8E-762-2273-22829142226ref|XP_006572635.1|PREDICTED: protein STICHEL-like 1-like, partial [Apis mellif...
216816Bifidobacterium longum1 (0.03%)9E-5232-2141-18521142185ref|WP_010081813.1|COG2812: DNA polymerase III, gamma/tau subunits, partial [Bi...
416591Thermotoga lettingae TMO2 (0.05%)2E-723-2832-28228041281ref|YP_001470630.1|DNA polymerase III subunits gamma and tau [Thermotoga lettin...
657316Megamonas hypermegale ART12/11 (0.03%)3E-922-3323-33334640332ref|YP_007834527.1|DNA polymerase III, subunits gamma and tau [Megamonas hyperm...
914143Streptococcus pneumoniae 20712471 (0.03%)5E-921-3001-30034539300ref|WP_001822936.1|DNA polymerase III subunit gamma/tau [Streptococcus pneumoni...
401526Thermosinus carboxydivorans Nor13 (0.07%)2E-942-3243-32435337323ref|WP_007288059.1|DNA polymerase III, subunits gamma and tau [Thermosinus carb...
525897Desulfomicrobium baculatum DSM 40281 (0.03%)8E-851-3141-31532137316ref|YP_003156737.1|DNA polymerase III subunits gamma and tau [Desulfomicrobium ...
469383Conexibacter woesei DSM 146841 (0.03%)6E-845-3027-31131837305ref|YP_003397074.1|DNA polymerase III subunits gamma and tau [Conexibacter woes...
295837Rhodomonas baltica1 (0.03%)4E-532-2835-28321637282ref|YP_001293483.1|DNA polymerase III [Rhodomonas salina] gb|ABO70861.1| DNA po...
573370Desulfovibrio magneticus RS-11 (0.03%)2E-845-3036-30332036299ref|YP_002953908.1|DNA polymerase III gamma and tau subunit [Desulfovibrio magn...
411464Desulfovibrio piger ATCC 290981 (0.03%)3E-842-3013-30131936300ref|WP_006007937.1|DNA polymerase III subunit gamma/tau [Desulfovibrio piger] g...
269798Cytophaga hutchinsonii ATCC 334062 (0.05%)6E-836-3628-36631536359ref|YP_677846.1|DNA polymerase III subunits tau/gamma [Cytophaga hutchinsoni...
525903Thermanaerovibrio acidaminovorans DSM 65891 (0.03%)2E-791-2811-28030336282ref|YP_003317345.1|DNA polymerase III subunits gamma and tau [Thermanaerovibrio...
546414Deinococcus deserti VCD1152 (0.05%)4E-754-2893-28528936286ref|YP_002784724.1|DNA polymerase III subunits gamma and tau [Deinococcus deser...



Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington