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Job 88258 [SSGCID - MygeA.00085.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] UDP-glucose 4-epimerase (MG_118) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MIGAKTRVAIVGGIGYIGSCFASFIKEQNDKLIVTVIDNNKNNHVIKLLKKIGIEFYFADLLDRHKLTEVIAAIQPDVVFHFAAKTSVSESVHNPLKYFDCNVIGTLNLISAISNLQKPIKLFFASSAAVYGQTTNSYISEEIVITETQATNPYGLSKFLDELILNAVAKNSQLQVVCLRFFNVAGAILPFGNFNGNTTLLIPNLVKAFLKQTPFFLYGNDYATKDGSCIRDYIHVYDICNAHFLLWKWLNDHRQIKFETFNLGSGIGTSNLEVIDIAKKVFYPSRLNLEIRPKRSWDPAILVANVAKAKQTFQFKITRNLKDMISDERNFYENFYNDAY
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)
XXXXX--XXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXX
psipred
------EEEEE----HHHHHHHHHHHH---EEEEEEE-----HHHHHH------EEEEEE---HHHHHHHHHH----EEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEE---------------------------HHHHHHHHHHHHHHHHHHHH---EEEE--------------------HHHHHHHHHHH-----EEE----------EEE--EEHHHHHHHHHHHHHHHHH-------EEE------EEHHHHHHHHHHHH-------EE--------------HHHHHHHH-------HHHHHHHHHHHHHH------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    23	    0.230
  max. Y    23	    0.279
  max. S    22	    0.597
  mean S     1-22   0.292
       D     1-22   0.285    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.285 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-340     alignment     3enkA_204     1-340   0.8578   ISOMERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
632516Caldicellulosiruptor lactoaceticus 6A1 (0.03%)1E-1018-3382-32437539335ref|YP_004026072.1|udp-glucose 4-epimerase [Caldicellulosiruptor kristjanssonii...
521460Caldicellulosiruptor bescii DSM 67252 (0.05%)1E-1018-3382-32437439335ref|YP_002572818.1|UDP-glucose 4-epimerase [Caldicellulosiruptor bescii DSM 672...
632292Caldicellulosiruptor hydrothermalis 1081 (0.03%)1E-1008-3382-32437239335ref|YP_003992850.1|udp-glucose 4-epimerase [Caldicellulosiruptor hydrothermalis...
351627Caldicellulosiruptor saccharolyticus DSM 89031 (0.03%)1E-1028-3382-32437738335ref|YP_001180296.1|UDP-glucose 4-epimerase [Caldicellulosiruptor saccharolyticu...
632518Caldicellulosiruptor owensensis OL1 (0.03%)1E-1018-3382-32437638335ref|YP_004002118.1|udp-glucose 4-epimerase [Caldicellulosiruptor owensensis OL]...
608506Caldicellulosiruptor obsidiansis OB471 (0.03%)1E-1018-3382-32437538335ref|YP_003840824.1|UDP-glucose 4-epimerase [Caldicellulosiruptor obsidiansis OB...
632348Caldicellulosiruptor kronotskyensis 20021 (0.03%)1E-1008-3382-32437238335ref|YP_004024403.1|udp-glucose 4-epimerase [Caldicellulosiruptor kronotskyensis...
324057Paenibacillus sp. JDR-24 (0.1%)1E-1046-3384-32838637337ref|YP_003009774.1|UDP-glucose 4-epimerase [Paenibacillus sp. JDR-2] ref|WP_015...
1204474Fusobacterium nucleatum CTI-11 (0.03%)1E-1026-3381-32637637337ref|WP_008702684.1|UDP-glucose 4-epimerase [Fusobacterium nucleatum] gb|EEO4368...
868595Desulfotomaculum carboxydivorans CO-1-SRB1 (0.03%)1E-1016-3351-32237537334ref|YP_004496556.1|UDP-glucose 4-epimerase [Desulfotomaculum carboxydivorans CO...
620833Fusobacterium periodonticum D101 (0.03%)1E-1016-3381-32637437337ref|WP_005964991.1|UDP-glucose 4-epimerase [Fusobacterium periodonticum] gb|EKA...
654421Anoxybacillus sp. SK3-41 (0.03%)1E-1018-3322-31837437328ref|WP_021095803.1|UDP-glucose 4-epimerase [Anoxybacillus sp. SK3-4] gb|EPZ3744...
1297579Fusobacterium nucleatum CC531 (0.03%)1E-1006-3381-32637337337ref|YP_008475664.1|UDP-glucose 4-epimerase [Fusobacterium nucleatum subsp. vinc...
1032505Fusobacterium sp. OBRC11 (0.03%)1E-1006-3381-32637337337gb|EUB38118.1|UDP-glucose 4-epimerase GalE [Fusobacterium sp. OBRC1]
936562Fusobacterium sp. CM212 (0.05%)1E-1016-3381-32637337337gb|ETT06798.1|UDP-glucose 4-epimerase GalE [Fusobacterium sp. CM21]
748727Clostridium ljungdahlii DSM 135281 (0.03%)7E-976-3351-32236037334ref|YP_003780333.1|UDP-glucose 4-epimerase [Clostridium ljungdahlii DSM 13528] ...
209882Fusobacterium nucleatum subsp. vincentii ATCC 492562 (0.05%)9E-946-3261-31435037325ref|WP_005888886.1|UDP-glucose 4-epimerase [Fusobacterium nucleatum] gb|EAA2473...
111823Caldanaerobacter subterraneus1 (0.03%)1E-1066-3381-32539036337ref|WP_022588470.1|UDP-glucose 4-epimerase [Caldanaerobacter subterraneus] gb|E...
1202533Bacillus nealsonii AAU11 (0.03%)1E-1046-3381-32638636337ref|WP_016204368.1|UDP-glucose 4-epimerase GalE [Bacillus nealsonii] gb|EOR2223...
1262769Clostridium sp. CAG:10132 (0.05%)1E-1046-3381-32638336337ref|WP_016405210.1|uDP-glucose 4-epimerase [Clostridium sp. CAG:1013] emb|CCX37...






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