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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450
	MKSVTVKQLLQTPRKFNNKQIKLSGWVKNKRASANIIFLAISDGSSINTLQAVVKQEDNPQVFSLLQTVNLASAVMVWGEIILTPKAKQPLELKLKQVSLLAQAESDYPLQKKEHSQEFFRSNAHLRVRAKTYFAVMKIRSVLSHAIFEYFFKNDFILVQSPILTSNDCEGAGETFVIKDSETFFNKTTFLTVSGQFGAEAFAQAFKKVFTFGPTFRAEKSHTNRHLSEFWMIEPEIAFANLKDLMQLIQNLIKFLIKKVMENASDELNVLAKQFSNDIISNLKTIISTKKFPIIEYSKALAILKESSDTKKTNFELNDFSFGIDLKTEHERFLCEQYFQNQPLFVINYPKELKAFYMKTNTDNKTVAAVDLLLPKIGEICGGSERESDLNQLKNRCQSLNIDTKSLNWYLDMRKWGYFASAGFGLGFDRLLAYICGLENIRDAIPFPRVHGTINF
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	XXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXX
psipred	--EEEHHHHHH-HHH----EEEEEEEEEEEE-----EEEEEE-----EEEEEEEE----HHHHHHHH------EEEEEEEEEE-------EEEEEEEEEEEE--------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---EEEE--EEE----------EEE---------EEE----HHHHHHHHHH----EEEE----------------HHHEEEEEEE---HHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------HHHHHEEE----------HHHHHHHHHHHHHHHHH----EE------HHHHHHHHHHHHH----EEEEE------------------HHHHHHHHH---EEEE--EE----HHHHHHHHHH----HHHHHHHHHHHH--------EEHHHHHHHHHH-----HHEEE-----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    53	    0.160
  max. Y    53	    0.233
  max. S    11	    0.463
  mean S     1-52   0.301
       D     1-52   0.260    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.260 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-456	alignment	3nemA_201	1-438	0.8746	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-139	1-456	1-456	502	100	456	ref|YP_006601128.1|	asparaginyl-tRNA ligase [Mycoplasma genitalium M2288] ref|WP...
662946	Mycoplasma genitalium M6282	1 (0.03%)	1E-139	1-456	1-456	501	100	456	ref|YP_006600126.1|	asparaginyl-tRNA ligase [Mycoplasma genitalium M6282] ref|WP...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	1E-134	1-456	1-455	486	69	456	ref|YP_005175490.1|	asparaginyl-tRNA synthetase [Mycoplasma pneumoniae 309] ref|...
1048830	Mycoplasma iowae 695	1 (0.03%)	1E-131	1-456	1-453	475	50	458	ref|WP_004025218.1|	asparaginyl-tRNA synthetase [Mycoplasma iowae] gb|EGZ31061.1...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-125	1-456	1-456	454	50	460	ref|YP_005880869.1|	Asparaginyl-tRNA synthetase [Mycoplasma gallisepticum str. F...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	1E-124	1-456	1-456	452	50	460	ref|NP_853021.2|	asparaginyl-tRNA synthetase [Mycoplasma gallisepticum str. R...
1129368	Spiroplasma melliferum IPMB4A	1 (0.03%)	1E-134	4-456	2-455	485	49	459	ref|WP_004028463.1|	asparaginyl-tRNA synthetase [Spiroplasma melliferum] gb|EHK5...
2133	Spiroplasma citri	2 (0.05%)	1E-133	4-456	2-455	481	48	459	emb|CAK98607.1|	putative asparaginyl-trna synthetase protein [Spiroplasma ci...
273035	Spiroplasma kunkelii CR2-3x	1 (0.03%)	1E-133	4-456	2-455	482	47	459	gb|AAP58930.1|	asparagine/asparaginyl-tRNA synthetase [Spiroplasma kunkelii...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	1E-122	5-456	4-454	444	47	455	ref|YP_002284767.1|	asparaginyl-tRNA synthetase [Ureaplasma urealyticum serovar ...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	2 (0.05%)	1E-122	5-456	4-454	443	47	455	ref|WP_004026011.1|	asparaginyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDT4...
550773	Ureaplasma urealyticum serovar 9 str. ATCC 33175	1 (0.03%)	1E-118	5-456	4-454	432	47	455	ref|WP_004026870.1|	asparaginyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX5...
1033810	Haloplasma contractile SSD-17B	1 (0.03%)	1E-144	1-456	1-464	520	46	472	ref|WP_008824873.1|	asparaginyl-tRNA synthetase [Haloplasma contractile] gb|ERJ1...
1188246	Mycoplasma mycoides subsp. capri PG3	1 (0.03%)	1E-134	4-456	1-454	485	46	459	ref|YP_004399774.1|	asparagine tRNA ligase [Mycoplasma mycoides subsp. capri LC ...
865867	Mycoplasma mycoides subsp. mycoides SC str. Gladysdale	1 (0.03%)	1E-134	4-456	1-454	485	46	459	ref|YP_007810861.1|	asparagine--tRNA ligase [Mycoplasma mycoides subsp. mycoides...
866629	Mycoplasma leachii 99/014/6	1 (0.03%)	1E-133	4-456	1-454	483	46	459	ref|YP_004047587.1|	asparagine--tRNA ligase [Mycoplasma leachii PG50] ref|YP_005...
743965	Mycoplasma putrefaciens KS1	1 (0.03%)	1E-133	4-456	1-454	480	46	459	ref|YP_004790478.1|	asparaginyl-tRNA synthetase [Mycoplasma putrefaciens KS1] re...
243272	Mycoplasma arthritidis 158L3-1	2 (0.05%)	1E-121	3-454	2-448	443	46	455	ref|YP_002000274.1|	asparaginyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]...
45361	Mycoplasma conjunctivae	1 (0.03%)	1E-120	4-454	1-445	440	46	453	ref|YP_002960782.1|	asparaginyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581...
872331	Mycoplasma hyorhinis HUB-1	1 (0.03%)	1E-120	4-454	1-444	437	46	452	ref|YP_003856275.1|	Putative asparaginyl-trna synthetase protein [Mycoplasma hyo...