old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350
	MISELQQKITVLKDLLKTNKADAILIGSDQNRFWLTNFPSSAGWLIITSNKAKLFIDGRYYEAARNFINPIVEVELFVSFKQVKAFCESNGINHLLIEGDYLTFNYQDWIQAICKQYTVINAQEIRRVKLPSEIQAIEKAVDITRKVAVKLKRFIKPKMTELFISQWITNELVKQGGAKNSFDPIVATGKNGANPHHKPTKTIVKEGDFITCDFGTIYNGYCSDITRTFLVGKKPKSAKLLSAYKKVEEANLAGINAVNTTLTGSQVDKVCRDIIENSEFKDFFVHSTGHGVGIDIHEMPNVSQSYNKLLCENGVVTIEPGIYIPNLGGIRIEDMVLVKKEKSVWLSKSIPRAF
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%)	XXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX
psipred	-HHHHHHHHHHHHHHHHH----EEEE------EE--------EEEEEE----EEEE----HHHHHHH-----EEEE---HHHHHHHHHH----EEEE------HHHHHHHHHH--------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----------EEEE-HHH----------EEE---EEEEEE-EEE--EEE--EEEEEE----HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-------------------------------EE----EEEE--EEEE----EEEEEEEEEE-----EE---------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.127
  max. Y    24	    0.144
  max. S     5	    0.240
  mean S     1-23   0.181
       D     1-23   0.158    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-354	alignment	5cdeA_202	1-398	0.8340	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662945	Mycoplasma genitalium M6320	1 (0.03%)	1E-117	1-354	1-354	426	100	354	ref|NP_072993.1|	M24 family metallopeptidase [Mycoplasma genitalium G37] ref|...
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-116	1-354	1-354	424	100	354	ref|YP_006601363.1|	aminopeptidase [Mycoplasma genitalium M2288] ref|WP_01489466...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	1E-109	1-354	1-354	402	79	354	ref|YP_005175711.1|	Xaa-Pro aminopeptidase [Mycoplasma pneumoniae 309] ref|YP_00...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	4E-95	1-352	2-350	354	53	352	ref|NP_853227.2|	Xaa-Pro aminopeptidase [Mycoplasma gallisepticum str. R(low)...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	7E-95	1-352	2-350	353	53	352	ref|YP_005880664.1|	Xaa-Pro aminopeptidase [Mycoplasma gallisepticum str. F] ref...
1037410	Mycoplasma columbinum SF7	1 (0.03%)	7E-99	5-348	1-345	367	41	348	ref|WP_006608323.1|	Xaa-Pro aminopeptidase [Mycoplasma columbinum] gb|EGV00553.1...
1276258	Spiroplasma apis B31	1 (0.03%)	1E-111	8-347	2-344	407	40	344	ref|YP_008868857.1|	Xaa-Pro dipeptidase [Spiroplasma apis B31] ref|WP_023789762....
265311	Mesoplasma florum L1	1 (0.03%)	1E-105	7-354	2-352	388	40	354	ref|YP_053622.1|	Xaa-Pro dipeptidase [Mesoplasma florum L1] ref|WP_011183278....
1188246	Mycoplasma mycoides subsp. capri PG3	1 (0.03%)	1E-109	8-354	3-353	403	39	354	gb|ACU78245.1|	peptidase, M24 family [Mycoplasma mycoides subsp. capri str....
2102	Mycoplasma mycoides	1 (0.03%)	1E-110	1-354	1-357	403	39	361	ref|WP_017697911.1|	Xaa-Pro-dipeptidase [Mycoplasma mycoides]
865867	Mycoplasma mycoides subsp. mycoides SC str. Gladysdale	1 (0.03%)	1E-109	8-354	3-353	402	39	354	ref|YP_007811166.1|	peptidase, M24 family [Mycoplasma mycoides subsp. mycoides S...
272632	Mycoplasma mycoides subsp. mycoides SC str. PG1	1 (0.03%)	1E-109	1-354	1-357	402	39	361	ref|NP_975352.1|	Xaa-Pro dipeptidase [Mycoplasma mycoides subsp. mycoides SC ...
862259	Mycoplasma mycoides subsp. capri LC str. 95010	1 (0.03%)	1E-109	1-354	1-357	402	39	361	ref|YP_004400046.1|	Xaa Pro dipeptidase [Mycoplasma mycoides subsp. capri LC str...
502347	Escherichia albertii TW07627	2 (0.05%)	5E-87	106-353	1-250	328	39	251	ref|WP_002461646.1|	aminopeptidase Y [Escherichia albertii] gb|EDS92442.1| amino...
592031	Eubacterium saphenum ATCC 49989	1 (0.03%)	9E-73	123-354	6-234	280	39	232	ref|WP_005837823.1|	Xaa-Pro dipeptidase [Eubacterium saphenum] gb|EEU03845.1| pe...
1276227	Spiroplasma chrysopicola DF-1	1 (0.03%)	1E-114	1-349	1-358	417	38	360	ref|YP_008017865.1|	Xaa-Pro dipeptidase [Spiroplasma chrysopicola DF-1] ref|WP_0...
1276229	Spiroplasma syrphidicola EA-1	1 (0.03%)	1E-113	1-349	1-358	414	38	360	ref|YP_008026673.1|	Xaa-Pro dipeptidase [Spiroplasma syrphidicola EA-1] ref|WP_0...
1179777	Mycoplasma sp. G5847	1 (0.03%)	1E-110	7-354	2-353	404	38	355	ref|WP_008364499.1|	metallopeptidase M24 family protein [Mycoplasma sp. G5847] g...
880447	Mycoplasma leachii PG50	1 (0.03%)	1E-109	8-354	3-353	402	38	354	ref|YP_004047110.1|	M24 family peptidase [Mycoplasma leachii PG50] ref|WP_013447...
866629	Mycoplasma leachii 99/014/6	1 (0.03%)	1E-109	8-354	3-353	402	38	354	ref|YP_005907081.1|	Xaa-Pro peptidase [Mycoplasma leachii 99/014/6] ref|WP_01458...