old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 .
	MKQKIIIFGGSFDPIHNAHLYIAKHAIKKIKAQKLFFVPTYNGIFKNNFHASNKDRIAMLKLAIKSVNNALVSNFDIKTKNAFSINTVNHFKSCYPTSEIYFLIGSDKLNELEKWDHIQQLKDLCTFVCYERKPYPFNKKIANQFNVKYLAKCPLEIASSKLLNQPRKKLIPLAVLNYINTNHLYLIPTLKAMVDDKRFQHCLRVGKLAKQLAIANKLDAKRAFVAGAYHDLAKQLPVDQLVNIATSELKITNYPSWKVLHSYVGAYILKNWFGVKDKMIINAIKNHTIPPKQVSKLDMIVYLADKLEPNRKQEQWSGGIEIDQLVKLAKSNLKQAYLITLKYVQNLVKD
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	---------------------XXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred	---EEEEE--------HHHHHHHHHHHHH----EEEEEE-------------HHHHHHHHHHHHHH--------EEE-----EEEEEHHHHH-------EEEEEEHHHHHH----HHHHHHHHH--EEEE--------HHH-----EEEEE-----------------------------------------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHH----HHH------HHHHHHHHHHHHH----HHHHHHHHHH--------HHHHHHEE-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
sam	---EEEEEE------HHHHHHHHHHHHHHH---EEEEE--------------HHHHHHHHHHHHH----EEEEEEEEE-----EHHHHHHHHHH----EEEEEE---HHHHHHHH--HHHHHHH-EEEEEE-------HHHHH----EEE--------HHHHHHHHHH----HHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHH--HHH------EHHHHHHHHHHHHH----HHHHHHHHH---------HHHHEEEEE-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-
jufo	--EEEEEE------HHHHHHHHHHHHHHHH---EEEEEEE-----------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH-----EEEEEE---HHHHHHHHHHHHHHHHHEEEEEEE--------HHHH------HHHH-----HHHHHH----HH---HHH-------------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHH---------HHHHHHHHHHHHHHHHH----HHHHHHHH----------HHHHHHHEE----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    52	    0.125
  max. Y     2	    0.133
  max. S    32	    0.229
  mean S     1-1    0.177
       D     1-1    0.150    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.150 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-187	alignment	4ymiB_203	1-198	0.832100	--
	188-350	alignment	2ogiA_201	1-193	0.923800	HYDROLASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662947	Mycoplasma genitalium M2288	1 (0.03%)	2E-90	1-350	1-350	339	100	350	ref|NP_072906.2|	nicotinate-nucleotide adenylyltransferase [Mycoplasma genita...
2097	Mycoplasma genitalium	1 (0.03%)	1E-75	27-350	3-326	290	100	324	ref|WP_009885777.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma genita...
722438	Mycoplasma pneumoniae FH	1 (0.03%)	1E-82	1-350	1-349	313	58	350	ref|YP_005881353.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma pneumo...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	4E-82	1-350	1-349	311	58	350	ref|NP_110024.2|	nicotinate-nucleotide adenylyltransferase [Mycoplasma pneumo...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	5E-79	7-350	2-344	301	58	344	ref|YP_005175575.1|	putative nicotinate-nucleotide adenylyl transferase [Mycopla...
272634	Mycoplasma pneumoniae M129	1 (0.03%)	1E-78	7-350	2-344	300	58	344	sp|P75442.2|Y336_MYCPN	RecName: Full=Uncharacterized protein MG240 homolog gb|AAB96...
1048830	Mycoplasma iowae 695	1 (0.03%)	6E-64	2-350	3-347	251	37	352	ref|WP_004024830.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma iowae]...
367737	Arcobacter butzleri RM4018	2 (0.05%)	4E-35	4-163	2-157	155	37	161	ref|YP_001491015.1|	nicotinate (nicotinamide) nucleotide adenylyltransferase [Ar...
562982	Gemella morbillorum M424	1 (0.03%)	6E-36	5-143	3-144	158	36	142	ref|WP_004632984.1|	nicotinate nucleotide adenylyltransferase [Gemella morbillor...
1159211	Streptococcus pneumoniae SPAR55	1 (0.03%)	3E-7	1-47	1-45	63	36	47	ref|YP_003877544.1|	phosphopantetheine adenylyltransferase [Streptococcus pneumo...
1159204	Mycoplasma gallisepticum NC08_2008.031-4-3P	1 (0.03%)	2E-71	3-349	2-357	275	35	356	ref|YP_006581298.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma gallis...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	6E-71	3-349	2-357	274	35	356	ref|NP_853199.2|	putative nicotinate-nucleotide adenylyltransferase [Mycoplas...
1006581	Mycoplasma gallisepticum S6	1 (0.03%)	5E-71	3-349	2-357	274	35	356	ref|YP_008894335.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma gallis...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	8E-71	3-349	2-357	273	35	356	ref|YP_005880690.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma gallis...
272633	Mycoplasma penetrans HF-2	1 (0.03%)	1E-61	3-350	2-345	243	35	351	ref|NP_757906.1|	nicotinate-nucleotide adenylyltransferase [Mycoplasma penetr...
580327	Thermoanaerobacterium thermosaccharolyticum DSM 571	1 (0.03%)	8E-45	181-349	1-166	187	35	172	ref|YP_003851748.1|	metal dependent phosphohydrolase [Thermoanaerobacterium ther...
697303	Thermoanaerobacter wiegelii Rt8.B1	1 (0.03%)	9E-44	195-350	17-169	184	35	159	ref|YP_004819721.1|	metal dependent phosphohydrolase [Thermoanaerobacter wiegeli...
391592	Caminibacter mediatlanticus TB-2	3 (0.08%)	1E-38	4-169	2-160	167	35	167	ref|WP_007475097.1|	nicotinate-nucleotide adenylyltransferase [Caminibacter medi...
683083	Campylobacter jejuni subsp. jejuni 414	1 (0.03%)	7E-34	4-143	2-142	151	35	141	ref|WP_002863733.1|	nicotinate-nucleotide adenylyltransferase [Campylobacter jej...
1276258	Spiroplasma apis B31	1 (0.03%)	3E-83	1-346	1-341	315	34	348	ref|YP_008868830.1|	nicotinic acid mononucleotide adenylyltransferase [Spiroplas...