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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490
	MSTDKKTLGEKPNSTKPELSEELIAELKKQRILEKNRPYKKMIYVDNKVQRKHRHENIAFLKTLHENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHIENDDTNTVINLLTEAWEKKSKKKQKNITLSNKEIISVLAKFELPEDEIIYVLDELRDKGIQLQHDVEEHIHEFRANQDLSIIDEDIEELTSKNISNRDKVDDNVRFFLGSLDFSKMLDFESEQRIAKVLNSTDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEKMGGQAEGFNVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNSEKIDELLNNNLSEQEELIVRMRIGMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLRHAVRNNPISMSFLRINEKKD
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	---------------------------------------------------------------------------------------------------------------------------XXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX---------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (33%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------XXXXXXXXXXXXXXXXXXXXX-X-X------------------------------------XXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX
psipred	--------------------HHHHHHH----HHH----HHHHHH-------------HH--------------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHH-----------HHHHHH------HHHHHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHH------HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHHH---HHH--HHHHHHHHHH------------------HHHEEE------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    21	    0.105
  max. Y     2	    0.154
  max. S     1	    0.238
  mean S     1-1    0.238
       D     1-1    0.187    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.187 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-79	alignment	2ohfA_301	1-327	0.357700	HYDROLASE
	80-497	alignment	6n61F_101	1-395	0.511100	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662945	Mycoplasma genitalium M6320	1 (0.03%)	1E-116	1-497	1-497	424	100	497	ref|NP_072914.1|	RNA polymerase sigma factor [Mycoplasma genitalium G37] ref|...
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-116	1-497	1-497	424	100	497	ref|YP_006601280.1|	RNA polymerase sigma factor [Mycoplasma genitalium M2288] re...
662946	Mycoplasma genitalium M6282	1 (0.03%)	1E-116	1-497	1-497	424	100	497	ref|YP_006600275.1|	RNA polymerase sigma factor [Mycoplasma genitalium M6282] re...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	1E-108	1-497	1-499	399	87	500	ref|NP_110040.1|	RNA polymerase sigma factor [Mycoplasma pneumoniae M129] ref...
1307	Streptococcus suis	1 (0.03%)	1E-23	274-348	1-75	118	75	75	gb|ABL84377.1|	DNA directed RNA polymerase sigma 42 protein [Streptococcus ...
1129	Synechococcus	4 (0.1%)	6E-13	273-320	1-48	83	69	48	gb|AAC60415.1|	RpoD2 [Synechococcus]
1159204	Mycoplasma gallisepticum NC08_2008.031-4-3P	1 (0.03%)	3E-90	38-495	193-643	339	53	458	ref|YP_006581270.1|	RNA polymerase sigma factor RpoD (Sigma-A) [Mycoplasma galli...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	4E-90	38-495	193-643	338	53	458	ref|NP_853171.2|	RNA polymerase sigma factor RpoD [Mycoplasma gallisepticum s...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-89	38-495	196-646	336	53	458	ref|YP_005880716.1|	RNA polymerase sigma factor RpoD (Sigma-A) [Mycoplasma galli...
1006581	Mycoplasma gallisepticum S6	1 (0.03%)	1E-89	38-495	196-646	336	53	458	ref|YP_008894314.1|	RNA polymerase sigma factor [Mycoplasma gallisepticum S6] re...
439235	Desulfatibacillum alkenivorans AK-01	2 (0.05%)	6E-75	244-489	355-593	288	51	246	ref|YP_002432234.1|	RpoD subfamily RNA polymerase sigma-70 subunit [Desulfatibac...
102890	Frankia sp. ACN14a	1 (0.03%)	2E-59	233-437	16-214	237	50	205	gb|AAR84419.1|	essential primary sigma 70 factor [Frankia sp. ACN14a]
258230	Frankia sp. CeD	1 (0.03%)	1E-58	233-437	19-217	234	50	205	gb|AAR84414.1|	essential primary sigma 70 factor [Frankia sp. ORS020607] gb...
1048830	Mycoplasma iowae 695	1 (0.03%)	2E-86	72-494	3-426	326	49	426	ref|WP_004024914.1|	RNA polymerase sigma factor [Mycoplasma iowae] gb|EGZ31366.1...
520487	Brucella suis bv. 3 str. 686	1 (0.03%)	3E-75	250-489	1-233	289	49	240	ref|WP_004691006.1|	RNA polymerase subunit sigma [Brucella suis] gb|EEY33107.1| ...
102893	Frankia sp. ARgP5ag	1 (0.03%)	1E-58	233-437	19-217	234	49	205	gb|AAR84417.1|	essential primary sigma 70 factor [Frankia sp. ARgP5ag]
55148	Deinococcus proteolyticus	1 (0.03%)	7E-39	300-472	1-168	168	49	173	gb|AAS21043.1|	major sigma factor 70, partial [Deinococcus grandis] gb|AAS2...
1111120	Acidaminococcus sp. BV3L6	1 (0.03%)	2E-74	226-489	324-581	286	47	264	ref|YP_004897502.1|	RNA polymerase [Acidaminococcus intestini RyC-MR95] ref|WP_0...
262489	delta proteobacterium MLMS-1	5 (0.12%)	1E-72	240-491	296-540	281	47	252	ref|WP_007290772.1|	RNA polymerase subunit sigma-70 [delta proteobacterium MLMS-...
515615	Mycobacterium tuberculosis 94_M4241A	1 (0.03%)	3E-57	288-489	2-196	229	47	202	ref|WP_003901454.1|	RNA polymerase sigma factor [Mycobacterium tuberculosis] gb|...