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Job 88275 [SSGCID - MygeA.00962.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Uracil-DNA glycosylase (MG_097) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

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Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MVMDDLFQRMVSCVLPSWRAFIDEEVKKPYFQALLEKLKALKATIIPKPELIFRVFSFFKPIDTKVIIFGQDPYPSPNDACGLAFASNNSKTPASLKRIILRLEKEYPSLKQESSWQQNFLLNWAEQGVLLLNGILTTTVFIRNAHKNWGWEEFNCNLLTFLKNQNIKPLLVFLGVQTKNFVVKSIGNVDGFEHLSYPHPSPLSGNLFLTNPNDLFKTINNWLKQHNQKIINWAVVKNASFDQLS
tmhmm (0)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
--------------------------------XXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%)
XXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX---------------------------------------------------XXXXXX
psipred
---HHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHH---EE-----HHHHHHH------EEEEEE----------EEEEEEE---------HHHHHHHHHHHH-------------HHHHHHH---HHHHHHHH------------HHHHHHHHHHHHHH----EEEEEEEHHHHHHHHHH-------EEEE------------------HHHHHHHHHHH--------------------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    23	    0.117
  max. Y     3	    0.137
  max. S     2	    0.194
  mean S     1-2    0.194
       D     1-2    0.164    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.164 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
  128     0.00     128  


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-245     alignment     3cxmA_201     1-242   0.8595   HYDROLASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
512564Mycoplasma crocodyli MP1451 (0.04%)5E-5817-2374-22023038224ref|YP_003559960.1|uracil-DNA glycosylase [Mycoplasma crocodyli MP145] ref|WP_0...
347256Mycoplasma hominis ATCC 231141 (0.04%)3E-4919-2347-21320138216ref|YP_003302971.1|uracil-DNA glycosylase [Mycoplasma hominis ATCC 23114] ref|W...
445973Clostridium bartlettii DSM 167952 (0.07%)5E-5311-1571-14621337150ref|WP_007287842.1|uracil-DNA glycosylase [[Clostridium] bartlettii] gb|EDQ9538...
243272Mycoplasma arthritidis 158L3-11 (0.04%)4E-5119-2346-21620736218ref|YP_002000250.1|uracil-DNA glycosylase [Mycoplasma arthritidis 158L3-1] ref|...
35770Tomato big bud phytoplasma1 (0.04%)8E-31118-2351-11414036118gb|AAM28543.1|AF494513_1uracil-DNA glycosylase [Tomato big bud phytoplasma]
469616Fusobacterium mortiferum ATCC 98171 (0.04%)6E-8511-2351-22132035228ref|WP_005883047.1|uracil-DNA glycosylase [Fusobacterium mortiferum] gb|EEO3653...
469618Fusobacterium varium ATCC 277251 (0.04%)3E-8311-2351-22131435228ref|WP_005949746.1|uracil-DNA glycosylase [Fusobacterium varium] gb|EES63650.1|...
469617Fusobacterium ulcerans ATCC 491851 (0.04%)6E-8411-2351-22131634228ref|WP_005978738.1|uracil-DNA glycosylase [Fusobacterium ulcerans] gb|EFS25419....
929558Sulfurimonas gotlandica GD11 (0.04%)4E-7713-2352-22029334226ref|WP_008337812.1|uracil-DNA glycosylase [Sulfurimonas gotlandica] gb|EDZ62312...
374463Baumannia cicadellinicola str. Hc (Homalodisca coagulata)1 (0.04%)2E-7617-2332-21629234221ref|YP_589039.1|uracil-DNA glycosylase [Baumannia cicadellinicola str. Hc (H...
859654Candidatus Blochmannia vafer str. BVAF1 (0.04%)4E-7317-2356-22228034223ref|YP_004124601.1|uracil-DNA glycosylase [Candidatus Blochmannia vafer str. BV...
37692Candidatus Phytoplasma mali1 (0.04%)5E-6318-2342-21224734220ref|YP_002004264.1|uracil-DNA glycosylase [Candidatus Phytoplasma mali] ref|WP_...
412614Vibrio cholerae 2740-801 (0.04%)2E-4017-1316-12117234119ref|WP_001896064.1|uracil-DNA glycosylase, partial [Vibrio cholerae] gb|EAX5660...
1202534Clostridium sartagoforme AAU11 (0.04%)6E-8510-2351-22232033229ref|WP_016209157.1|uracil-DNA glycosylase [Clostridium sartagoforme] gb|EOR1985...
1028802Haemophilus haemolyticus M191071 (0.04%)6E-8515-2351-21931933225ref|WP_005628749.1|uracil-DNA glycosylase [Haemophilus haemolyticus] gb|EGT7672...
500633Clostridium hiranonis DSM 132751 (0.04%)8E-8511-24515-24531933238ref|WP_006440890.1|uracil-DNA glycosylase [[Clostridium] hiranonis] gb|EEA84329...
888728Haemophilus aegyptius ATCC 111161 (0.04%)6E-8415-2351-21931633225ref|YP_004137458.1|uracil-DNA-glycosylase [Haemophilus influenzae F3047] ref|WP...
1129794Glaciecola psychrophila 1701 (0.04%)4E-8317-2353-21931433223ref|WP_007636337.1|uracil-DNA glycosylase [Glaciecola psychrophila] dbj|GAC3671...
694569Aggregatibacter actinomycetemcomitans D7S-11 (0.04%)5E-8217-2353-21931033225ref|YP_006287521.1|uracil-DNA glycosyllase [Aggregatibacter actinomycetemcomita...
1035194Aggregatibacter actinomycetemcomitans Y41 (0.04%)7E-8217-2359-22530933225ref|WP_005595029.1|uracil-DNA glycosylase [Aggregatibacter actinomycetemcomitan...






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