old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 .
	MAANNKKYFLESFSPLGYVKNNFQGNLRSVNWNLVDDEKDLEVWNRIVQNFWLPEKIPVSNDIPSWKKLSKDWQDLITKTFTGLTLLDTIQATIGDICQIDHALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQINAAHEWVVNTESLQKRAKALIPYYTGNDPLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKAFVFELMYRLIELEKDYLKELYEGFGIVDDAIKFSVYNAGKFLQNLGYDSPFTAAETRIKPEIFAQLSARADENHDFFSGNGSSYVMGVSEETNDDDWNF
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (9%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------XXXXXXXXXXXXXX-----------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (7%)	XXXXXXXXXXXX---XX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXX-------------------------------------------------------------------------------------------------XXXX---
psipred	-----HHH---------HHH-----------------HHHHHHHHHHHH-----HH--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH----------------EE-------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C     3	    0.114
  max. Y     3	    0.188
  max. S     2	    0.316
  mean S     1-2    0.313
       D     1-2    0.237    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.237 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-340	alignment	5cnsE_206	1-352	0.9152	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662945	Mycoplasma genitalium M6320	1 (0.03%)	1E-102	1-340	1-340	379	100	340	ref|NP_072895.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-102	1-340	1-340	378	100	340	ref|YP_006601260.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	6E-99	3-340	2-339	367	90	338	ref|NP_110010.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
1179777	Mycoplasma sp. G5847	1 (0.03%)	1E-101	3-340	2-339	373	82	338	ref|WP_008362674.1|	ribonucleoside-diphosphate reductase subunit beta [Mycoplasm...
1188246	Mycoplasma mycoides subsp. capri PG3	1 (0.03%)	1E-100	3-340	2-339	370	81	338	ref|YP_004400491.1|	ribonucleoside diphosphate reductase 2 betachain [Mycoplasma...
865867	Mycoplasma mycoides subsp. mycoides SC str. Gladysdale	1 (0.03%)	1E-99	3-340	2-339	369	81	338	ref|NP_975825.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
866629	Mycoplasma leachii 99/014/6	1 (0.03%)	5E-99	3-340	2-339	367	81	338	ref|YP_004046902.1|	ribonucleoside-diphosphate reductase subunit beta [Mycoplasm...
340047	Mycoplasma capricolum subsp. capricolum ATCC 27343	1 (0.03%)	7E-99	3-340	2-339	367	80	338	ref|YP_424093.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
2095	Mycoplasma capricolum	1 (0.03%)	3E-98	3-340	2-339	365	80	338	ref|WP_019269128.1|	ribonucleoside-diphosphate reductase [Mycoplasma capricolum]
1188240	Mycoplasma yeatsii 13926	1 (0.03%)	1E-100	3-340	2-339	373	79	338	ref|WP_004428009.1|	Ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasm...
2151	Mesoplasma florum	1 (0.03%)	1E-101	1-340	1-340	375	78	340	ref|YP_008689062.1|	Ribonucleotide reductase of class Ib (aerobic), beta subunit...
743965	Mycoplasma putrefaciens KS1	1 (0.03%)	1E-101	3-340	2-339	374	78	338	ref|YP_004790505.1|	ribonucleoside-diphosphate reductase subunit beta [Mycoplasm...
265311	Mesoplasma florum L1	1 (0.03%)	1E-101	1-340	1-340	373	78	340	ref|YP_053772.1|	ribonucleotide-diphosphate reductase subunit beta [Mesoplasm...
1292033	Mycoplasma putrefaciens Mput9231	1 (0.03%)	1E-101	3-340	2-339	373	78	338	ref|YP_007884726.1|	Ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasm...
634997	Mycoplasma hyorhinis DBS 1050	1 (0.03%)	1E-99	3-340	7-344	369	78	338	ref|YP_003856650.1|	Ribonucleoside-diphosphate reductase beta chai [Mycoplasma h...
2107	Mycoplasma pulmonis	1 (0.03%)	1E-97	2-340	3-341	363	78	339	ref|NP_326370.1|	ribonucleotide-diphosphate reductase subunit beta [Mycoplasm...
1276220	Spiroplasma taiwanense CT-1	1 (0.03%)	7E-98	3-340	4-341	363	78	338	ref|YP_008311102.1|	ribonucleoside diphosphate reductase 2 betachain [Spiroplasm...
838561	Spiroplasma mirum ATCC 29335	1 (0.03%)	4E-97	1-328	1-328	361	78	328	gb|AHF61148.1|	ribonucleotide-diphosphate reductase beta subunit [Spiroplas...
1276246	Spiroplasma culicicola AES-1	1 (0.03%)	1E-96	1-333	1-333	359	77	333	gb|AHI53358.1|	ribonucleoside diphosphate reductase 2 betachain [Spiroplasm...
512564	Mycoplasma crocodyli MP145	1 (0.03%)	1E-94	1-328	1-328	353	77	328	ref|YP_003560345.1|	ribonucleoside-diphosphate reductase, beta subunit [Mycoplas...