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Job 88283 [SSGCID - MygeA.01506.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Pyruvate dehydrogenase E1 component subunit alpha (MG_274) - BATCH:88256

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MAILIKNKVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRAGKMLNFAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNEKGSQIDAKYKTLPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAMNIASIHKWNTVFCINNNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAANYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQEEEEGMKSDPVKRLRNFLFDRSILNQAQEEEMFSKIEQEIQAAYEKMVLDTPVSVDEVFDYNYQELTPELVEQKQIAKKYFKD
tmhmm (0) 
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low complexity (0%) 
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coiled-coils (0%) 
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disordered (2%) 
XXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred 
------------EEEEE----------------HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH-----EEEE----HHHHHH----HHHHHHH-----------HHH--------------------HHHHH----EEEEEE---------HHHHHHHHHH-----EEEEEEE--------HHH------HHHHHEE----EEEE----HHHHHHHHHHHHHHHH-----EEEE--------------------HHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH------HHHHHHHHHHHHHHH-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.114
  max. Y    19	    0.131
  max. S    13	    0.186
  mean S     1-18   0.145
       D     1-18   0.136    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.136 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-358     alignment     3dvaA_301     1-365   0.9558   OXIDOREDUCTASE/TRANSFERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.03%)1E-1061-3581-358390100358ref|YP_006601312.1|pyruvate dehydrogenase component E1 subunit alpha [Mycoplasm...
662946Mycoplasma genitalium M62821 (0.03%)1E-1061-3581-35839199358ref|YP_006600303.1|pyruvate dehydrogenase component E1 subunit alpha [Mycoplasm...
1006581Mycoplasma gallisepticum S61 (0.03%)1E-1041-3581-35838663358ref|YP_006581368.1|pyruvate dehydrogenase E1 component alpha subunit [Mycoplasm...
708616Mycoplasma gallisepticum str. F1 (0.03%)1E-1041-3581-35838663358ref|NP_853267.1|pyruvate dehydrogenase E1 component subunit alpha [Mycoplasm...
710128Mycoplasma gallisepticum str. R(high)1 (0.03%)1E-1021-3581-35937763359ref|YP_005880034.1|Pyruvate dehydrogenase E1 component alpha subunit [Mycoplasm...
29562Mycoplasma ovipneumoniae2 (0.05%)1E-10012-35718-37137150354gb|AFN66536.1|pyruvate dehydrogenase E1-alpha subunit [Mycoplasma ovipneum...
1048830Mycoplasma iowae 6951 (0.03%)2E-993-3562-35536950354ref|WP_004025410.1|pyruvate dehydrogenase E1 subunit alpha [Mycoplasma iowae] g...
2109Mycoplasma synoviae1 (0.03%)1E-9610-35721-36936050349ref|WP_020002787.1|pyruvate dehydrogenase E1 subunit alpha [Mycoplasma synoviae...
45361Mycoplasma conjunctivae1 (0.03%)1E-10110-35616-37137449356ref|YP_002960584.1|Pyruvate dehydrogenase E1-alpha subunit [Mycoplasma conjunct...
754503Mycoplasma hyopneumoniae 74221 (0.03%)1E-9910-35716-37136949356ref|YP_287513.1|pyruvate dehydrogenase E1-alpha subunit [Mycoplasma hyopneum...
907287Mycoplasma hyopneumoniae 1681 (0.03%)2E-9910-35716-37136949356ref|YP_115778.1|pyruvate dehydrogenase E1-subunit alpha [Mycoplasma hyopneum...
2107Mycoplasma pulmonis1 (0.03%)4E-9913-35720-36336749345ref|NP_326595.1|pyruvate dehydrogenase E1 component, alpha subunit [Mycoplas...
634997Mycoplasma hyorhinis DBS 10501 (0.03%)1E-10212-35617-36137748345ref|YP_005905245.1|pyruvate dehydrogenase E1-alpha subunit [Mycoplasma hyorhini...
1118964Mycoplasma hyorhinis SK761 (0.03%)1E-10112-35617-36137448345ref|YP_007013145.1|pyruvate dehydrogenase E1 component subunit alpha [Mycoplasm...
1129369Mycoplasma hyorhinis GDL-11 (0.03%)1E-10012-35617-36137348345ref|YP_005205263.1|pyruvate dehydrogenase E1 component alpha subunit [Mycoplasm...
1246955Mycoplasma cynos C1421 (0.03%)1E-10212-35617-36337947347ref|YP_007258345.1|Pyruvate dehydrogenase E1-alpha subunit [Mycoplasma cynos C1...
872331Mycoplasma hyorhinis HUB-11 (0.03%)1E-10012-35617-36137247345ref|YP_003856512.1|Pyruvate dehydrogenase E1-alpha subunit [Mycoplasma hyorhini...
1034808Mycoplasma anatis 13401 (0.03%)6E-9710-35519-36536046347ref|WP_006886352.1|pyruvate dehydrogenase E1 subunit alpha [Mycoplasma anatis] ...
747682Mycoplasma alligatoris A21JP21 (0.03%)5E-9710-35518-36436045347ref|WP_005683148.1|pyruvate dehydrogenase E1 subunit alpha [Mycoplasma alligato...
512564Mycoplasma crocodyli MP1451 (0.03%)2E-9610-35518-36435945347ref|YP_003560042.1|pyruvate dehydrogenase E1 component, alpha subunit [Mycoplas...



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