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Job 88284 [SSGCID - MygeA.01514.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Thymidine kinase (MG_034) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MGKYQPSFQTKKGWTEVICGPMFSGKTEKLLHKIKRWKIAKISVVIFKPIIDTRQTNIVKSRNGEYDQAITINSPFEIYDHLVDKNYQIVAIDEAQFFSNEIIEVVTTLNEIGTNVIISGLDTDFRAEPFGCIPQLLAIADVVNKLDAICNVCGSLAQRTQRLVNKNTNDNLVLIGDAEAYEARCKLHHSFLTKKHVTVKTKNFKEQVQGKTQ
tmhmm (0)
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low complexity (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (18%)
XXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX
psipred
------------EEEEEEE-----HHHHHHHHHHHHHHHH--EEEEEEE--------EE------EEEEEE---HHHHHHHHHH---EEEEE--HHH--HHHHHHHHHHHH---EEEEEEE---HH----HHHHHHHHH---EEEE-EEE-----EEEEEEEE--------EEEE-----EEEE-HHHHH-----HHHHHHHHHHHHH-----

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    55	    0.103
  max. Y     8	    0.133
  max. S     4	    0.223
  mean S     1-7    0.191
       D     1-7    0.160    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.160 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-213     alignment     2uz3A_203     1-190   0.7735   TRANSFERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.04%)2E-701-2131-213271100213ref|YP_006601042.1|thymidine kinase [Mycoplasma genitalium M2288] ref|WP_014894...
662945Mycoplasma genitalium M63201 (0.04%)3E-701-2131-213270100213ref|NP_072694.1|thymidine kinase [Mycoplasma genitalium G37] ref|YP_00659955...
662946Mycoplasma genitalium M62821 (0.04%)2E-691-2131-21326799213ref|YP_006600045.1|thymidine kinase [Mycoplasma genitalium M6282] ref|WP_014894...
272634Mycoplasma pneumoniae M1291 (0.04%)2E-611-1881-18624170188ref|NP_109732.1|thymidine kinase [Mycoplasma pneumoniae M129] ref|WP_0108744...
722438Mycoplasma pneumoniae FH1 (0.04%)1E-641-2099-21425268209ref|YP_005881088.1|thymidine kinase [Mycoplasma pneumoniae FH] ref|WP_014574851...
1238993Mycoplasma pneumoniae M129-B71 (0.04%)3E-641-2091-20625068209ref|YP_005175277.1|thymidine kinase [Mycoplasma pneumoniae 309] ref|YP_00734767...
0UNIDENTIFIED153 (6.59%)1E-7110-1975-19527549192ref|YP_008419318.1|thymidine kinase [Geobacillus sp. JF8] ref|WP_020961524.1| t...
857293Caloramator australicus RC31 (0.04%)4E-679-1934-19126049189ref|WP_008907718.1|thymidine kinase [Caloramator australicus] emb|CCC58000.1| T...
991791Clostridium acetobutylicum DSM 17311 (0.04%)3E-669-1974-19525749193ref|NP_349490.1|thymidine kinase [Clostridium acetobutylicum ATCC 824] ref|Y...
81408Geobacillus caldoxylosilyticus1 (0.04%)1E-7210-2035-20127848198ref|WP_017436893.1|thymidine kinase [Geobacillus caldoxylosilyticus]
471223Geobacillus sp. WCH701 (0.04%)1E-7210-2035-20127848198ref|YP_002951232.1|thymidine kinase [Geobacillus sp. WCH70] ref|WP_015865330.1|...
495036Geobacillus sp. G11MC161 (0.04%)2E-7210-1995-19727748194ref|YP_001127409.1|thymidine kinase [Geobacillus thermodenitrificans NG80-2] re...
1136178Geobacillus thermoglucosidans TNO-09.0201 (0.04%)5E-7210-2055-20327648200ref|YP_003990959.1|thymidine kinase [Geobacillus sp. Y4.1MC1] ref|YP_004589721....
33931Bacillus caldovelox1 (0.04%)7E-7210-2015-19927648196dbj|BAK69314.1|thymidine kinase [Bacillus caldovelox]
1394Bacillus caldolyticus1 (0.04%)1E-7110-2015-19927548196dbj|BAK69312.1|thymidine kinase [Bacillus caldolyticus]
1462Geobacillus kaustophilus1 (0.04%)2E-7110-2005-19827448195ref|YP_149233.1|thymidine kinase [Geobacillus kaustophilus HTA426] ref|WP_01...
550542Geobacillus sp. Y412MC521 (0.04%)3E-7110-2015-19927448196ref|YP_003254467.1|thymidine kinase [Geobacillus sp. Y412MC61] ref|YP_003672855...
33938Geobacillus thermocatenulatus1 (0.04%)1E-7010-2015-19927148196dbj|BAK69315.1|thymidine kinase [Geobacillus thermocatenulatus]
1211706Paenisporosarcina sp. TG201 (0.04%)2E-6910-1925-19026848187ref|WP_019415000.1|thymidine kinase [Paenisporosarcina sp. TG20]
1178537Bacillus sp. HYC-101 (0.04%)4E-6810-1925-19026348187ref|WP_008354973.1|thymidine kinase [Bacillus sp. HYC-10] gb|EKF37292.1| thymid...






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