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Job 88289 [SSGCID - MygeA.17894.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] 30S ribosomal protein S2 (MG_070) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MSDTNTEKPELVSLNKLSEMRTNIGMVKRYWNPKMGFFIEPERKHNNDLLKLDLQYQALKTAYNFIKDVVKNHGQILFVGTKNDYVKKLVIDIAKRVNVAYITQRWLGGTLTNFKTLSISINKLNKLVEQQKQNANDLTKKENLLLSREIERLEKFFGGVKNLKRLPNLIVIDDPVYEKNAVLEANSLKIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAIAEAKGFETLYAYKPDEQIQIEIPPKQERQVINRSNTRNITNQRLNINRQQQETL
tmhmm (0)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (7%)
------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------
disordered (21%)
XXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
psipred
-------------HHHHHHH------------HHHHHHH-------EEEE-HHHHHHHHHHHHHHHHHHHH---EEEEEE---HHHHHHHHHHHHHH----------------HHHHH-HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-----------EEEEE--HH-HHHHHHHHH----EEEEEE---------EE--------HHHHHHHHHHHHHHHHH----HHHH----HHHH-----HHHHHHH-----------------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    30	    0.123
  max. Y     3	    0.135
  max. S     2	    0.217
  mean S     1-2    0.195
       D     1-2    0.158    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-284     alignment     4toiA_301     1-307   0.7711   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
1212764Paenibacillus popilliae ATCC 147061 (0.03%)5E-939-2411-23234741234ref|WP_006286750.1|30S ribosomal protein S2 [Paenibacillus popilliae] dbj|GAC43...
459527Saccharibacillus kuerlensis1 (0.03%)8E-939-2411-23234641234ref|WP_018975001.1|30S ribosomal protein S2 [Saccharibacillus kuerlensis]
796606Bacillus methanolicus MGA31 (0.03%)4E-929-2361-22734441229ref|WP_003349088.1|30S ribosomal protein S2 [Bacillus methanolicus] gb|EIJ79609...
380174Cohnella laeviribosi1 (0.03%)4E-929-2411-23234441234ref|WP_019003789.1|30S ribosomal protein S2 [Cohnella laeviribosi]
379896Paenibacillus fonticola1 (0.03%)6E-929-2411-23234341234ref|WP_019638048.1|30S ribosomal protein S2 [Paenibacillus fonticola]
225906Paenibacillus sanguinis1 (0.03%)1E-919-2411-23234341234ref|WP_018750945.1|30S ribosomal protein S2 [Paenibacillus sanguinis]
1227351Paenibacillus sp. FSL H8-4571 (0.03%)1E-919-2411-23234241234ref|YP_003244191.1|30S ribosomal protein S2 [Paenibacillus sp. Y412MC10] ref|WP...
1227076Paenibacillus sp. FSL R5-8081 (0.03%)1E-919-2411-23234241234gb|ETT34544.1|30S ribosomal protein S2 [Paenibacillus sp. FSL R5-808]
1274524Bacillus sonorensis L121 (0.03%)4E-919-2361-22734141229ref|WP_006638147.1|30S ribosomal protein S2 [Bacillus sonorensis] gb|EME74267.1...
1302650Bacillus subtilis subsp. subtilis str. BAB-11 (0.03%)3E-919-2361-22734141229ref|NP_389531.1|30S ribosomal protein S2 [Bacillus subtilis subsp. subtilis ...
445972Anaerotruncus colihominis DSM 172411 (0.03%)5E-919-2361-22734041229ref|WP_006875232.1|30S ribosomal protein S2 [Anaerotruncus colihominis] gb|EDS1...
1126218Bacillus licheniformis WX-021 (0.03%)1E-909-2361-22733941229ref|YP_079043.1|30S ribosomal protein S2 [Bacillus licheniformis DSM 13 = AT...
1202457Bacillus sp. CPSM81 (0.03%)1E-909-2361-22733941229ref|YP_008078009.1|30S ribosomal protein S2 [Bacillus licheniformis 9945A] ref|...
742743Dialister succinatiphilus YIT 118501 (0.03%)2E-909-2381-22933941231ref|WP_008859226.1|30S ribosomal protein S2 [Dialister succinatiphilus] gb|EHO6...
1262878Eubacterium sp. CAG:1151 (0.03%)9E-909-2361-22733641229ref|WP_021956579.1|30S ribosomal protein S2 [Eubacterium sp. CAG:115] emb|CCY73...
717961Eubacterium siraeum V10Sc8a1 (0.03%)1E-899-2391-23033641232ref|YP_007840554.1|SSU ribosomal protein S2P [Eubacterium siraeum V10Sc8a] ref|...
657319Eubacterium siraeum 70/31 (0.03%)1E-899-2391-23033541232ref|YP_007774964.1|SSU ribosomal protein S2P [Eubacterium siraeum 70/3] ref|WP_...
387092Nitratiruptor sp. SB155-21 (0.03%)3E-8511-2341-22332141225ref|YP_001357001.1|30S ribosomal protein S2 [Nitratiruptor sp. SB155-2] ref|WP_...
3888Pisum sativum1 (0.03%)2E-11190-2351-46774146emb|CAA29348.1|rps2 [Pisum sativum]
986075Caldalkalibacillus thermarum TA2.A11 (0.03%)3E-959-2411-23235440234ref|WP_007503194.1|30S ribosomal protein S2 [Caldalkalibacillus thermarum] gb|E...






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