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Job 88298 [SSGCID - MygeA.19932.d] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Oligopeptide transport ATP-binding protein OppF (MG_080) - BATCH:88256

Features and Secondary Structure  
 
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MENQNTKKPLVNVKALSMMFKVRGTLFKALDEIGFTVNEGDFFGVIGESGSGKSTTGKCLIRLNIPSGGKIEIANHLLSGKKLTKENNQWLKQNIQMVFQDPYSSINPTKNVLTVISEPLVISKTVFGETKQYLKSLQKLSFKVKKTLLRNDIELETKFHNNFFKTVIKQINESLFNFEDLDYKDLKPSHLRQRIINETDKFIEKIRSEFALFYDFYANQSVPLQKALDDANSSLTPSSVIELKNQLKALQKQAKISKAAWDILQALKQNQKELKDYENYVHFELQKKPRIYLNTWLLTTKSYIKDSKQNMQLTDDIFAFSYNSMVDKKRNLVLILSKYYKLLPYFYDQSVFDNADQFDEIANLIFFDLVETLLGVTSLFNDALAADKVPLIKFAKFLNKLCDLRFLTLKKSFKKTRVSCSFSFNSEPEILFANSCYDLQQMPQIIKPFWEKLFNEQNYQKIIDSVSRLNVMIANYITKAFEIKKTIDEKLREFKQQNLALKKAYSANKKSEANKASINELKVNLKTLKKQLKQEKNTTKKQSKKELKPLLKEHHTALKLHDEFNHDLRKWFKKLNFMVKKYNRLENSQKKFCLVKKLKALFKKQDETLQSELRPKLKTFGVINFEYKRAVKESNVFRLVHFAKNIFKPFLFFNLTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNPVHPYTRSLIKASPKLSKINVDLASFDENFTYDSDYSLTNMPFYIKVPNSEEHELYCTQKQFDSWIKEATPIN
tmhmm (0)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (7%)
------------------------------------------------XXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (7%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (8%)
XXXXXX-XXX---------------------------------------------------------------------XXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-----------XXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX-------------------------X-XXXXXX
psipred
---------EEEE---EEEEE-----EEEE---EEEE----EEEEEE-----HHHHHHHHH-------EEEEE--EE-------HHHHHHHH---EEEE------------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------HHHHH--------HHHHHHHHHHH----EEEE-----HHHHHHHHHHHHHHHHHHHHH--EEEEEE---HHHHHHHH--EEEEE--EEEEE--HHHH-----HH-HHHHHH---------HHH--------------EE-----EEEEEEEEEE------------------HHHHHHHHHHHHHHHH---EEE--------HHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHH-----EEEE--HHHHHHHHHHHHHHHHHHHH---HHHHHHH--EEEEEE---EEEE--HHHHHH----HHHHHHHH---------------------------------------------------------------------------EEEE----EE-----HHHHHHHHHH-------EEHH---HHHHH---EE-----------------HHHHHHHHHHH----HHHHHHHHHHHHHH----HHHH--------HHHHHHHHHHHHHH----EEEEE---HHHHHHHHHHHHHHHHHHHHHH--EEEEEE--HHHHHHH---EEEEE--EEEEE--HHHHH-----HHHHHHHH----------------------------------------------------HHH-------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    30	    0.128
  max. Y    30	    0.219
  max. S    10	    0.530
  mean S     1-29   0.398
       D     1-29   0.289    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.289 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-184     alignment     5lj9A_307     1-229   0.733300   --
  185-333     alignment     4k1pA_303     1-338   0.179400   --
  334-539     alignment     6dfpA_202     1-361   0.0516   --
  540-848     alignment     6cvlC_307     1-343   0.537900   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-184     alignment     5lj9A_307     1-229   0.733300   --
  185-333     msa     4k1pA_303     1-338   0.179400   --
  334-539     cutpref     --     --   0.000000   --
  540-848     alignment     6cvlC_307     1-343   0.537900   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
488339synthetic Mycoplasma genitalium JCVI-1.01 (0.03%)0.01-8481-848667100848ref|NP_072742.1|peptide ABC transporter ATP-binding protein [Mycoplasma geni...
662947Mycoplasma genitalium M22881 (0.03%)0.01-8481-848667100848ref|YP_006601094.1|peptide ABC transporter ATP-binding protein [Mycoplasma geni...
662945Mycoplasma genitalium M63201 (0.03%)0.01-8481-848665100848ref|YP_006600592.1|peptide ABC transporter ATP-binding protein [Mycoplasma geni...
663918Mycoplasma genitalium M23211 (0.03%)0.01-8481-848665100848ref|YP_006599604.1|peptide ABC transporter ATP-binding protein [Mycoplasma geni...
662946Mycoplasma genitalium M62821 (0.03%)0.01-8481-848665100848ref|YP_006600093.1|peptide ABC transporter ATP-binding protein [Mycoplasma geni...
2104Mycoplasma pneumoniae1 (0.03%)1E-1581-8481-85156664852ref|WP_017532950.1|peptide ABC transporter ATP-binding protein [Mycoplasma pneu...
1238993Mycoplasma pneumoniae M129-B71 (0.03%)1E-1581-8481-85156564852ref|NP_109906.1|hypothetical protein MPN218 [Mycoplasma pneumoniae M129] ref...
1112856Mycoplasma pneumoniae 3091 (0.03%)1E-1581-8481-85156663852ref|YP_005175456.1|oligopeptide ABC transporter ATP-binding protein [Mycoplasma...
545693Bacillus megaterium QM B15513 (0.07%)1E-88554-84110-30733536306ref|YP_003561177.1|oligopeptide ABC transporter ATP-binding protein OppF [Bacil...
1404Bacillus megaterium1 (0.03%)8E-89554-8417-30433536306ref|WP_020465427.1|peptide ABC transporter ATP-binding protein [Bacillus megate...
1006007Bacillus megaterium WSH-0023 (0.07%)3E-88554-84110-30733336306ref|YP_005496732.1|oligopeptide ABC transporter ATPase [Bacillus megaterium WSH...
383631Methylophilales bacterium HTCC21811 (0.03%)7E-60586-7956-22223936222ref|WP_008107469.1|peptide ABC transporter ATPase [Methylophilales bacterium HT...
592022Bacillus megaterium DSM 3194 (0.1%)4E-88554-84110-30733335306ref|YP_003595923.1|oligopeptide ABC transporter ATP-binding protein OppF [Bacil...
866895Halobacillus halophilus DSM 22661 (0.03%)3E-85547-8431-30732335316ref|YP_006179931.1|peptide/nickel ABC transporter ATP-binding protein [Halobaci...
908337Eremococcus coleocola ACS-139-V-Col81 (0.03%)2E-83548-8443-30431735315ref|WP_006418302.1|peptide ABC transporter substrate-binding protein [Eremococc...
1053166Bacillus cereus AND14071 (0.03%)4E-74544-8063-27528635279ref|WP_001196368.1|peptide ABC transporter substrate-binding protein [Bacillus ...
182217Helicobacter cetorum MIT 00-71281 (0.03%)1E-71543-7992-27127835277ref|YP_006223542.1|ABC-type transport system, ATP binding protein, putative dip...
232721Acidovorax sp. JS424 (0.1%)1E-68569-79150-28326835239ref|YP_985206.1|ABC transporter-like protein [Acidovorax sp. JS42] ref|WP_01...
592010Abiotrophia defectiva ATCC 491761 (0.03%)4E-87549-8424-30232934312ref|WP_023391450.1|oligopeptide ABC transporter, ATP-binding protein OppF [Abio...
1233170Clostridium bifermentans ATCC 192991 (0.03%)7E-87543-8452-30932934319ref|WP_021431178.1|oligopeptide/dipeptide ABC transporter, ATP-binding , C-term...






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