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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510
	MKRCYITTPIYYASGKPHIGHAFTTILADVIKRFKIQNGYEAFLLVGSDEHGNKIESKAKSLNLDPKTFVDINAQAFKLMWKTLNISFDHFIRTTDEIHKQQVQKTFQDLYDKKLIYQSEWKGAYCVECEQNYFTFNKQTMLCEIGHNLSLVQEPCWFISFSSTKNWIETTIGKNQLNIIPKSRASELKNNFINNGLNDLALTRKNVTWGIKVPFDPNQTIYVWFDALFSYITNLGFRNGDPNFIKWWNNDNKEREVIHLISREITRFHCIYWPIFLHLLDIKLPTQFLSHGWIVDGEGRKMSKSLNNVISPEQLIDQFGVDGTRYCLLKEMRLDKDNRCSVSILKEIYNADLANSFGNHVSRTFGMIKKYLNGKLEYQIITDNALQKIMILIDESIVQFDHYFNSYEFYRAINLLLKIVFELSKLIDDFKPWELFKNQEFSLLKQLLFTCVRCVQVCYVLLTPILVNTASKVFHLFNFADDACRKDQLRDATLLKKIIISNSMEVLFKRVD
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	---------------------------------------------------------XXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	---EEEEE--------HHHHHHHHHHHHHHHHHHHH-----EEEE------HHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH---EE--EEEEEE-----EE-------------------------------HHHHHHHHHHHHH------HHEE------------EEE---------------------EEE-----HHHH-------HHHHHH--------EEEEEEEEEEEEEEEEEE-HHHH---------------EE----------------HHHHHHH----HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHH-----------------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    23	    0.350
  max. Y    23	    0.263
  max. S    12	    0.296
  mean S     1-22   0.209
       D     1-22   0.242    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.242 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-512	alignment	1qqtA_201	1-546	0.8315	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	1E-132	1-512	1-512	478	71	512	ref|YP_005175255.1|	methionyl-tRNA synthetase [Mycoplasma pneumoniae 309] ref|YP...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	1E-127	2-511	5-516	461	44	517	ref|WP_004025641.1|	methionyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDU064...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	2 (0.05%)	1E-127	2-511	5-516	461	43	517	ref|WP_006689328.1|	methionyl-tRNA synthetase [Ureaplasma parvum] gb|EDT49242.1|...
550747	Ureaplasma urealyticum serovar 12 str. ATCC 33696	1 (0.03%)	1E-126	2-511	5-516	460	43	517	ref|WP_004027063.1|	methionyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX533...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-126	2-511	5-516	460	43	517	ref|YP_002284592.1|	methionyl-tRNA synthetase [Ureaplasma urealyticum serovar 10...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-121	2-512	15-542	442	41	531	ref|YP_005880451.1|	methionyl-tRNA synthetase [Mycoplasma gallisepticum str. F] ...
698948	Thermoanaerobacterium thermosaccharolyticum M0795	1 (0.03%)	1E-175	2-512	3-507	620	39	514	ref|YP_007297531.1|	protein containing C-terminal region/beta chain of methionyl...
858215	Thermoanaerobacterium xylanolyticum LX-11	1 (0.03%)	1E-174	2-512	3-507	618	39	514	ref|YP_004469825.1|	methionyl-tRNA synthetase [Thermoanaerobacterium xylanolytic...
1094508	Thermoanaerobacterium saccharolyticum JW/SL-YS485	1 (0.03%)	1E-174	2-512	3-507	618	39	514	ref|YP_006391276.1|	methionyl-tRNA synthetase [Thermoanaerobacterium saccharolyt...
580327	Thermoanaerobacterium thermosaccharolyticum DSM 571	1 (0.03%)	1E-173	2-512	3-507	616	39	514	ref|YP_003850766.1|	methionyl-tRNA synthetase [Thermoanaerobacterium thermosacch...
401526	Thermosinus carboxydivorans Nor1	4 (0.1%)	1E-170	2-512	4-510	605	39	515	ref|WP_007289033.1|	methionyl-tRNA synthetase [Thermosinus carboxydivorans] gb|E...
246194	Carboxydothermus hydrogenoformans Z-2901	1 (0.03%)	1E-169	2-512	3-508	601	39	514	ref|YP_361414.1|	methionyl-tRNA synthetase [Carboxydothermus hydrogenoformans...
760568	Desulfotomaculum kuznetsovii DSM 6115	1 (0.03%)	1E-165	2-512	3-509	588	39	516	ref|YP_004515494.1|	methionyl-tRNA synthetase [Desulfotomaculum kuznetsovii DSM ...
471223	Geobacillus sp. WCH70	3 (0.08%)	1E-176	2-512	4-512	625	38	516	ref|YP_002948241.1|	methionyl-tRNA synthetase [Geobacillus sp. WCH70] ref|WP_012...
420246	Geobacillus thermodenitrificans NG80-2	3 (0.08%)	1E-175	2-512	4-512	622	38	516	ref|YP_001124162.1|	methionine-tRNA ligase/methionyl-tRNA synthetase [Geobacillu...
495036	Geobacillus sp. G11MC16	2 (0.05%)	1E-175	2-512	4-512	622	38	516	ref|WP_008881679.1|	methionyl-tRNA synthetase [Geobacillus sp. G11MC16] gb|EDY04...
111823	Caldanaerobacter subterraneus	1 (0.03%)	1E-175	1-512	1-507	621	38	516	ref|WP_022588502.1|	methionyl-tRNA synthetase [Caldanaerobacter subterraneus] gb...
273068	Thermoanaerobacter tengcongensis MB4	1 (0.03%)	1E-175	1-512	1-507	620	38	516	ref|NP_621810.1|	methionyl-tRNA synthetase [Thermoanaerobacter tengcongensis ...
301148	Caldibacillus debilis	1 (0.03%)	1E-174	2-511	6-513	618	38	515	ref|WP_020154633.1|	methionyl-tRNA synthetase [Caldibacillus debilis]
1235835	Anaerotruncus sp. G3(2012)	1 (0.03%)	1E-173	2-512	6-512	613	38	514	ref|WP_016314988.1|	methionine-tRNA ligase [Anaerotruncus sp. G3(2012)] gb|EOS64...