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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780
	MDQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFIIQAKYEVNKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQQRRSQICGFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKLNIKPLKATLCISLRDKDHLVSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINLKQTELVVVSRMATAKKLPVKKAINYCFSDATNTQLINFQGKNGSKLITTSELNQMSKTAISQTRFNKLN
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-------------------------------------------------------------------------------------------------
coiled-coils (3%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	XXXXX--XX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X-XX------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX-XXX-X------------------------------------------------XXXXXX
psipred	-------EEEE-HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH----------EEEEEHHHH---------HHHHHHHHHH---------EEE-----------HHHHHHHHHH---HHHHHHHHHHHH--EEEEE--------EEEEE----HHHH---HHHHHHHH-------HHHHHHHHHHHH------HHHHH-EEE--------EE--HHHHHHHHHH----EEEEEEEEEE----EEEEEE------HHHHHHHHHHHHH-----EEEEEHH-----EEEEEEEE-----HHHHHHHHHHH---EEEE--EEEE----EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---EE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---------HHH----HHHHHHEE-----EEEE----EEEEE-------------------EEEEE-----EEEEEE---EEEEEE---------------HHH--------EEEEEEE-------EEEEE---EEEEEE-HHHHH------EEE-------EEEEEEE-----EEEEE----EEEEEEHHH----------EEEEEE----EEEEEEEE-----EEEEE----EEE--HHHHH--------EE------EEEEEE-----EEEEEEE----EEEEE----EEEEEEHHH-------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    33	    0.108
  max. Y     2	    0.125
  max. S     1	    0.150
  mean S     1-1    0.150
       D     1-1    0.138    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.138 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-781	alignment	1zvuA_301	1-685	0.842700	ISOMERASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1314	Streptococcus pyogenes	8 (0.2%)	6E-78	13-186	1-174	299	64	174	dbj|BAD00077.1|	DNA topoisomerase IV subunit C [Streptococcus pyogenes]
1329	Streptococcus canis	2 (0.05%)	3E-78	13-188	1-176	300	63	176	dbj|BAD00080.1|	DNA topoisomerase IV subunit C [Streptococcus canis]
99822	Streptococcus dysgalactiae subsp. dysgalactiae	2 (0.05%)	7E-78	13-188	1-176	299	63	176	dbj|BAD00078.1|	DNA topoisomerase IV subunit C [Streptococcus dysgalactiae s...
2096	Mycoplasma gallisepticum	1 (0.03%)	2E-53	1-139	1-137	218	63	139	gb|AAL69651.1|AF372652_1	topoisomerase IV subunit C, partial [Mycoplasma gallisepticu...
1340	Streptococcus porcinus	2 (0.05%)	5E-77	13-188	1-176	296	62	176	dbj|BAD00082.1|	DNA topoisomerase IV subunit C [Streptococcus porcinus]
2098	Mycoplasma hominis	1 (0.03%)	5E-46	30-119	1-90	192	62	90	emb|CAB10849.1|	DNA Gyrase subunit A [Mycoplasma hominis]
28251	Ornithobacterium rhinotracheale	1 (0.03%)	5E-64	44-179	1-136	253	60	136	gb|ABC88665.1|	DNA gyrase A [Ornithobacterium rhinotracheale]
1092	Chlorobium limicola	1 (0.03%)	7E-73	38-185	1-148	282	59	148	emb|CAA70292.1|	DNA Gyrase subunit A [Chlorobium limicola]
37734	Enterococcus casseliflavus	1 (0.03%)	1E-42	27-109	1-83	181	59	83	gb|AAP84068.1|	gyrase [Enterococcus casseliflavus]
195	Campylobacter coli	7 (0.18%)	3E-75	36-189	1-154	290	58	154	emb|CAD37174.1|	DNA gyrase subunit A [Campylobacter coli] emb|CAD37175.2| DN...
32019	Campylobacter fetus subsp. fetus	1 (0.03%)	3E-68	44-185	1-142	266	58	142	dbj|BAD91163.1|	GyrA protein [Campylobacter fetus subsp. fetus]
29397	Lactobacillus delbrueckii subsp. lactis	2 (0.05%)	2E-46	66-168	1-103	194	57	103	gb|AAQ07076.1|AF496389_1	DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lacti...
54388	Salmonella enterica subsp. enterica serovar Paratyphi A	1 (0.03%)	1E-84	25-187	1-163	321	56	163	gb|AAP55215.1|	DNA gyrase subunit A [Salmonella enterica subsp. enterica se...
594	Salmonella enterica subsp. enterica serovar Gallinarum	3 (0.08%)	3E-84	26-190	1-165	320	56	165	gb|ABI30277.1|	gyrase subunit A [Salmonella enterica subsp. enterica serova...
648	Aeromonas caviae	1 (0.03%)	2E-73	27-173	1-147	284	56	147	gb|AAK15777.1|	DNA gyrase subunit A [Aeromonas caviae]
147728	Pseudomonas andersonii	1 (0.03%)	6E-69	41-179	1-139	269	56	139	gb|ABJ53249.1|	GyrA [Pseudomonas andersonii]
29486	Yersinia ruckeri	1 (0.03%)	3E-66	52-185	1-134	260	56	134	emb|CAD19825.1|	gyrase A subunit [Yersinia ruckeri] emb|CAD19826.2| gyrase A...
114517	Aeromonas veronii bv. sobria	2 (0.05%)	1E-76	25-175	1-151	294	55	151	gb|ABR23652.1|	gyrase A [Aeromonas veronii bv. sobria]
646	Aeromonas sobria	1 (0.03%)	2E-74	27-173	1-147	287	55	147	gb|AAK15778.1|	DNA gyrase subunit A [Aeromonas sobria]
396	Rhizobium phaseoli	1 (0.03%)	4E-73	38-185	1-148	283	55	148	emb|CAA64978.1|	DNA gyrase subunit A [Rhizobium phaseoli]