old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 88333 [SSGCID - MygeA.20013.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Uncharacterized lipoprotein MG321 (MG_321) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




Plots powered by Plotly.js.

Features and Secondary Structure  
 
                  1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910   
 
mklkkrylllgstltvsaALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTSSFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKKTTHSGLKGRAQKNGSTDSSDGSSKNDYTKFNEWDAIGTIYRDSSKSITEDPNYHKITQEATRYEFTINTSLSWVDNAGREVKQNNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLDVEKTVGMDKTNGSSDGNGKGIEITDENYDVENYRSVDDNKFNVYLTSPFPFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGGGVNAWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQPGATPEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKPYVANDSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYSTVPFGIFKEKPANGTSSGTNTDGIENDYYYKINNNQRLGLIPEQTGTFQKDKNVLDTATVKLSYYSSTKTNGAQVRTASTSGSSSQTSQVSSKQVSVTKQSFISALKKVGFTGNNPLHFNIKLGNASLSSNQVDYYNALKQALTELGNDNGENLIIPEIILGDAQGPTRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIGEVITYNSGSHIVRTLLLAASQNNVFNQIENKLQNNTTTNGKDWCSCITSADLFKDDPYVIKNFGTNGNNGTSASLAFTKKALSLLKFLVDNKVLKADKVKEAIKDPDKYLSKRSKIDDNKPANVSDIHIGYELKDLYDNAAQLNRFNSIWAEQDTDNAKFLITVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIATMRDSGYIDE
tmhmm (0)
                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)
                  -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
                  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (11%)
                  ------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------XXXX---------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------X-XX------------------XXXXXXXXXXXXXXXXXXX--------------------------------------XXXXX--------------------------------------------------------------------------------------------X
psipred
                  ---EE----------EEEEE----HHH--------EE--------------EEEEEEE--------EEEE----EEEEEE--EEEEEE------------------------------------EEEEE----------HHHHHHH---EEEEEEE-----EE-----------------HHHHHHHHHHHH----------HHHHHHH---HHHH--------EE------EEE---------EEE----EEEEEE----HHHHHHHHHHH---------------------EEEE-----EEEE-----HHHEE---------EEEE--EEE------EEEEHH---------------------EEEEEEEE------HHHHHHHHH----------HHHHHHHHHHH-------EEEEEE-----EEEE----EE-----EEE---HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-----EEEEEE----------------HHHH-------EEEE----EEE--------------EE-----------------HHHH-----HHHH------HHHHHHHHHHHHHHHHH--------EEEEEE-------HHHHHHHHHHHHHHHHH-------EEEEEEE--------EEEEEE-------EEEE----------EEEEEEEE-------------HHHHHHHHHHH---HHHHHHHHHHH----------------------HHHHHHH--------------HHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHH---------HHH----HHHHHH-------HHEEEHH-------EEEEEEE------------------HHH----EEEE-----------------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.252
  max. Y    19	    0.496
  max. S    17	    0.987
  mean S     1-18   0.960
       D     1-18   0.714    0.570  YES
Name=tmp_signalp_seq	SP='YES' Cleavage site between pos. 18 and 19: VSA-AL D=0.714 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-916     alignment     3o9pA_307     1-509   0.528000   PEPTIDE BINDING PROTEIN/PEPTIDE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
488339synthetic Mycoplasma genitalium JCVI-1.01 (0.04%)0.01-91619-934867100916ref|NP_072989.1|lipoprotein [Mycoplasma genitalium G37] ref|WP_010869430.1| ...
2097Mycoplasma genitalium1 (0.04%)0.035-9161-882823100882ref|WP_009885954.1|hypothetical protein [Mycoplasma genitalium]
663918Mycoplasma genitalium M23211 (0.04%)0.035-9161-882820100882ref|YP_006599864.1|lipoprotein [Mycoplasma genitalium M2321] ref|WP_014894032.1...
662947Mycoplasma genitalium M22881 (0.04%)0.035-9161-88180799882ref|YP_006601359.1|lipoprotein [Mycoplasma genitalium M2288] ref|WP_014894665.1...
662946Mycoplasma genitalium M62821 (0.04%)0.035-9161-88180699882ref|YP_006600351.1|lipoprotein [Mycoplasma genitalium M6282] ref|WP_014894287.1...
662945Mycoplasma genitalium M63201 (0.04%)0.035-9161-88080397882ref|YP_006600856.1|lipoprotein [Mycoplasma genitalium M6320] ref|WP_014894470.1...
2104Mycoplasma pneumoniae3 (0.12%)1E-134331-9161-63848567639ref|WP_017532855.1|hypothetical protein, partial [Mycoplasma pneumoniae]
1112856Mycoplasma pneumoniae 3091 (0.04%)0.01-91619-100377366990ref|YP_005175698.1|putative lipoprotein [Mycoplasma pneumoniae 309] ref|WP_0143...
722438Mycoplasma pneumoniae FH1 (0.04%)0.01-91619-100377166990ref|YP_005881461.1|hypothetical protein MPNE_0531 [Mycoplasma pneumoniae FH] re...
272634Mycoplasma pneumoniae M1293 (0.12%)1E-1251-52941-59145766556gb|AAB96030.1|conserved hypothetical protein [Mycoplasma pneumoniae M129]
0UNIDENTIFIED61 (2.41%)1E-1251-52919-56945566556sp|P75324.2|Y459_MYCPNRecName: Full=Uncharacterized lipoprotein MPN_459; Flags: Pr...
1238993Mycoplasma pneumoniae M129-B71 (0.04%)0.01-91619-100377365990ref|NP_110144.1|hypothetical protein MPN456 [Mycoplasma pneumoniae M129] ref...
272633Mycoplasma penetrans HF-27 (0.28%)1E-1622-91321-963579271004ref|NP_758150.1|lipoprotein [Mycoplasma penetrans HF-2] ref|WP_011077583.1| ...
1048830Mycoplasma iowae 6952 (0.08%)1E-1333-91127-82348223927ref|WP_004024783.1|hypothetical protein [Mycoplasma iowae] gb|EGZ31508.1| lipop...
1159203Mycoplasma gallisepticum CA06_2006.052-5-2P1 (0.04%)4E-7835-547358-89030021554ref|YP_006581400.1|hypothetical protein HFMG94VAA_3971 [Mycoplasma gallisepticu...
1159204Mycoplasma gallisepticum NC08_2008.031-4-3P1 (0.04%)5E-7835-547358-89030021554ref|YP_006582926.1|hypothetical protein HFMG96NCA_4091 [Mycoplasma gallisepticu...
1006581Mycoplasma gallisepticum S61 (0.04%)3E-7735-547358-88929721553ref|YP_008894441.1|hypothetical protein GCW_02930 [Mycoplasma gallisepticum S6]...
710128Mycoplasma gallisepticum str. R(high)1 (0.04%)2E-7635-547358-88929421550ref|NP_853298.2|hypothetical protein MGA_0226 [Mycoplasma gallisepticum str....
708616Mycoplasma gallisepticum str. F1 (0.04%)3E-7635-547358-88929321550ref|YP_005880591.1|hypothetical protein MGF_2297 [Mycoplasma gallisepticum str....
1159198Mycoplasma gallisepticum NC95_13295-2-2P1 (0.04%)8E-6535-447358-79225620452ref|YP_006582155.1|hypothetical protein HFMG95NCA_3898 [Mycoplasma gallisepticu...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington