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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870
	MFVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDPNLFGAVEFFITCKQNNIKPIIGLNLTVEYQKNDVKLLLIAKSNKGFQTLNKIALIQQKLEINSLVDQLTDIAVIICSLTTWKSTYKDVYQAKGIEINQTPIAILANAVNCEKTNSDQVVLTVLKQMKQNQTGKITTFDWDLKQKLNQISINENLKVKSEIQPFLDQKTAQQLFSETELNNLNDLVNRCELDLEHLKAASLSLTDNDAAVLESLCQTNLKQFLDKNQDLNKKAYQLRLEKELNVINKLNFASYFLVVNDLVNYAFKKDILIGSGRGSAVGSLVAFLLNITKIDPVQHQLIFERFISTHRQDLPDIDIDIMENKRAEMINYLFEKYGKENCAQIVTFQRFKTRSAVKEVAKLFNDYGISDMILGVLPKDQTITFTDLKATEDSALQLCLQQFGLIVELALAIVDFPRQSSIHASGIVIASNSLIKTIPLLQLDNNHFLTQVSMEWLSFFNLNKFDLLGLINLTMISDVITQIKPSNQTVNQFLNTISWTDQNTFINLVNEDTLGIFQLESFGMKKLLVQIKPKTINQLAIVLALYRPGAQDNINLFINRLHNGYDQSDIDPRILPIVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNNFDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYIQNLQKVQHLIQTQNNLQLTDVVSWCLDKTIGDIPLKDLLLLKTMGCFDFFEYTYDFNDAKDFWIKSDHLLFTRMPLEKKDSNFWIKQFFTN
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (5%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX-XXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX-X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX------X
psipred	-----------HHH-----HHHHHHHHHH----EEEE--HHHHHHHHHHHHHHH---EEEE----------------EE-----HHHHHHHHHHHHH-----HHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEE---------------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--EEE------HHHHHHHHHH---------------------------------HH--HHHHHHHHHHHHHHHEEEEEEEE----HHHHHHHHHH----HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------EEEE------EEE--EE-----EEEE----HHHH-------HHH----HHHHHHHHHHHH--------HHH-----HHHHHHHH---EEEEEE---HHHHHHHHH-----HHHHHHHHH----------HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH---EE---EE------EEEE-------HHH-----HHHHHHHHHHHHHHHHH-------HHHHHHH-------HHHHHHHHH------------HHHHHHHH-------HHH-----HHHH--HHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    37	    0.196
  max. Y    37	    0.240
  max. S    11	    0.457
  mean S     1-36   0.295
       D     1-36   0.261    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.261 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-874	alignment	3e0dA_201	1-1148	0.6584	TRANSFERASE/DNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
340047	Mycoplasma capricolum subsp. capricolum ATCC 27343	1 (0.03%)	4E-47	553-747	4-197	197	38	195	emb|CAA83754.1|	DNA Polymerase III (alpha) [Mycoplasma capricolum subsp. cap...
550747	Ureaplasma urealyticum serovar 12 str. ATCC 33696	1 (0.03%)	0.0	1-856	1-824	776	35	869	ref|WP_004027040.1|	DNA polymerase III subunit epsilon [Ureaplasma urealyticum] ...
515611	Ureaplasma urealyticum serovar 13 str. ATCC 33698	2 (0.05%)	0.0	1-856	1-824	776	35	869	ref|WP_004027240.1|	DNA polymerase III subunit epsilon [Ureaplasma urealyticum] ...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	2 (0.05%)	0.0	1-856	1-824	776	35	869	ref|WP_004025710.1|	DNA polymerase III subunit epsilon [Ureaplasma urealyticum] ...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	2 (0.05%)	0.0	1-856	1-824	774	35	869	ref|YP_002284852.1|	DNA polymerase III DnaE [Ureaplasma urealyticum serovar 10 s...
519849	Ureaplasma urealyticum serovar 7 str. ATCC 27819	2 (0.05%)	0.0	1-856	1-824	772	35	869	ref|WP_004026656.1|	DNA polymerase III subunit epsilon [Ureaplasma urealyticum] ...
75695	Aphanizomenon ovalisporum	2 (0.05%)	1E-140	319-693	1-403	505	34	404	gb|AAP47636.1|	DnaE precursor [Aphanizomenon ovalisporum]
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	2 (0.05%)	0.0	1-834	1-808	744	33	847	ref|WP_006689321.1|	DNA polymerase III subunit epsilon [Ureaplasma parvum] gb|ED...
32025	Helicobacter hepaticus	1 (0.03%)	5E-16	623-695	6-78	94	33	73	gb|AAL16728.1|AF358675_1	putative DNA polymerase III alpha chain [Helicobacter hepati...
357244	Orientia tsutsugamushi str. Boryong	1 (0.03%)	1E-143	424-860	571-1012	516	32	449	ref|YP_001248237.1|	DNA polymerase III alpha chain [Orientia tsutsugamushi str. ...
796606	Bacillus methanolicus MGA3	1 (0.03%)	0.0	2-873	3-895	1069	31	911	ref|WP_003347438.1|	DNA polymerase III subunit epsilon [Bacillus methanolicus] g...
1177926	Bacillus sp. M 2-6	1 (0.03%)	0.0	2-842	3-866	1053	31	875	ref|WP_008346079.1|	DNA polymerase III subunit epsilon [Bacillus] gb|EIL84242.1|...
2133	Spiroplasma citri	2 (0.05%)	0.0	4-871	5-871	810	31	889	emb|CAK99543.1|	probable dna polymerase III alpha chain transmembrane protei...
118168	Coleofasciculus chthonoplastes PCC 7420	1 (0.03%)	1E-168	196-666	2-512	599	31	513	ref|WP_006105456.1|	DNA polymerase III, alpha subunit subfamily, putative [Coleo...
334380	Orientia tsutsugamushi str. Ikeda	1 (0.03%)	1E-143	424-874	571-1018	516	31	461	ref|YP_001938085.1|	DNA polymerase III alpha chain [Orientia tsutsugamushi str. ...
997296	Bacillus methanolicus PB1	1 (0.03%)	0.0	2-873	3-895	1060	30	911	ref|WP_004438847.1|	DNA polymerase III subunit epsilon [Bacillus methanolicus] g...
536229	Bacillus pumilus ATCC 7061	2 (0.05%)	0.0	2-842	3-866	1042	30	875	ref|WP_003216661.1|	DNA polymerase III subunit epsilon [Bacillus pumilus] gb|EDW...
665952	Bacillus smithii 7_3_47FAA	1 (0.03%)	0.0	1-874	16-912	1042	30	913	ref|WP_003355625.1|	DNA polymerase III subunit epsilon [Bacillus smithii] gb|EHL...
315750	Bacillus pumilus SAFR-032	2 (0.05%)	0.0	2-842	3-866	1041	30	875	ref|YP_001487786.1|	DNA polymerase III DnaE [Bacillus pumilus SAFR-032] ref|WP_0...
471223	Geobacillus sp. WCH70	2 (0.05%)	0.0	2-874	4-889	1022	30	906	ref|YP_002950648.1|	DNA polymerase III subunit alpha [Geobacillus sp. WCH70] ref...