old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420
	MQQTFFKDPILGEIIFDENTKWMYELVNTKAFQRLRNIKQLGINFHFYPSGVHTRYAHSLGVYELIRRILNSSAFLNIDQIKKQTVLVAGLLHDLGHGPHSHAFEIYFAKNPDFKKQLFIHEKVTSMLVNSEPIVSILKANKIDPNLIGALIDENQNIQPINWWMRQLISSDLDTDRMDYLLRDAYFTGTSHSLVDYQSIINGMECVDNQGTYKIVFQEKCLPFIENFLITRHHMYQSIYSDGRSIATELNLWFVFQRIKALIEEDNFNFHNFKNVESVIKPLLKNQLFKKSLLTCFVKLDDYVFHSFLVNTFETTKDAILKTLLDSYLNTLKFQVKFYESCEKRDLDFELKVKEYQTPSYFITKFNNQFKGFYEGWNKHKNELKIKTSQNKIKNLSEISMLVKRSNELFFENSFYRWANVFYQN
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (0%)	X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred	---EEEEE-----EEE----HHHHHHH--HHHHHHH--------EEE------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----------HHHHHHH----------HHHHHHHHH----HHHHHHH----HHHHHHHHH---------HHHHH--------HHH-----HHHHH--------HHHHHH--EEE-----------HHHHHHHHHHHHHHHHHH-EEE-----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-----EEEE---HHHHHHHHHHHHHH-----EEEEEE-----------------EEEEE----EEEHHHH-HHHHHH------EEEEE-HHHH---

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.116
  max. Y    24	    0.111
  max. S    22	    0.134
  mean S     1-23   0.092
       D     1-23   0.102    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.102 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-425	alignment	3irhA_201	1-450	0.7788	HYDROLASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662946	Mycoplasma genitalium M6282	1 (0.03%)	1E-104	1-425	1-425	384	100	425	ref|YP_006600491.1|	HD domain-containing protein [Mycoplasma genitalium M6282] r...
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-104	1-425	1-425	384	100	425	ref|NP_073131.2|	HD domain-containing protein [Mycoplasma genitalium G37] ref...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.03%)	5E-92	1-424	1-424	345	75	424	ref|NP_110366.1|	ATPase [Mycoplasma pneumoniae M129] ref|YP_007348233.1| phos...
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	8E-92	1-424	1-424	344	75	424	ref|YP_005175928.1|	HD domain-containing protein [Mycoplasma pneumoniae 309] ref...
9258	Ornithorhynchus anatinus	1 (0.03%)	1E-34	2-117	23-139	154	38	120	ref|XP_001512350.1|	PREDICTED: SAM domain and HD domain-containing protein 1-lik...
455552	uncultured marine microorganism HF4000_APKG7N23	1 (0.03%)	6E-36	6-194	4-171	158	35	189	gb|ABZ09377.1|	putative HD domain protein [uncultured marine microorganism ...
879295	Lactobacillus iners SPIN 1401G	2 (0.07%)	9E-67	3-269	13-272	261	34	279	ref|WP_006738274.1|	phosphohydrolase [Lactobacillus iners] gb|EGG32084.1| HD dom...
879296	Lactobacillus iners SPIN 2503V10-D	1 (0.03%)	8E-67	3-269	12-271	261	34	279	ref|WP_006733345.1|	phosphohydrolase [Lactobacillus iners] gb|EFO70908.1| HD dom...
224308	Bacillus subtilis subsp. subtilis str. 168	1 (0.03%)	1E-20	2-89	10-97	107	34	90	emb|CAA51649.1|	ipa-93d [Bacillus subtilis subsp. subtilis str. 168]
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-72	1-420	1-426	280	33	429	ref|YP_005881032.1|	putative metal-dependent phosphohydrolase [Mycoplasma gallis...
1006581	Mycoplasma gallisepticum S6	1 (0.03%)	1E-72	1-420	1-426	280	33	429	ref|YP_008894635.1|	metal-dependent phosphohydrolase [Mycoplasma gallisepticum S...
1159204	Mycoplasma gallisepticum NC08_2008.031-4-3P	1 (0.03%)	3E-72	1-420	1-426	279	33	429	ref|YP_006586889.1|	metal-dependent phosphohydrolase [Mycoplasma gallisepticum N...
1159203	Mycoplasma gallisepticum CA06_2006.052-5-2P	1 (0.03%)	2E-72	1-420	1-426	279	33	429	ref|YP_006581612.1|	metal-dependent phosphohydrolase [Mycoplasma gallisepticum V...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	4E-72	5-420	10-426	278	33	420	ref|NP_853494.1|	putative metal-dependent phosphohydrolase [Mycoplasma gallis...
888746	Streptococcus peroris ATCC 700780	2 (0.07%)	5E-71	1-284	1-268	275	33	290	ref|WP_006145671.1|	phosphohydrolase [Streptococcus peroris] gb|EFX40348.1| HD d...
904785	Staphylococcus aureus subsp. aureus IS-157	1 (0.03%)	2E-67	1-284	11-275	263	33	288	ref|WP_001823370.1|	phosphohydrolase [Staphylococcus aureus] gb|EHS78729.1| HD d...
904747	Staphylococcus aureus subsp. aureus 21266	1 (0.03%)	3E-67	1-284	11-275	262	33	288	ref|WP_001806845.1|	phosphohydrolase [Staphylococcus aureus] gb|EGS89798.1| HD d...
1212765	Candidatus Mycoplasma haemolamae str. Purdue	1 (0.03%)	6E-53	5-307	25-325	215	33	314	ref|YP_006529828.1|	metal-dependent phosphohydrolase [Candidatus Mycoplasma haem...
1116213	Candidatus Mycoplasma haemominutum 'Birmingham 1'	1 (0.03%)	7E-52	5-317	20-331	211	33	328	ref|YP_007766289.1|	deoxyguanosinetriphosphate triphosphohydrolase [Candidatus M...
1307	Streptococcus suis	1 (0.03%)	3E-67	20-318	2-281	262	32	305	gb|ABL84390.1|	metal-dependent phosphohydrolase HD subdomain [Streptococcus...