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Job 88360 [SSGCID - MygeA.20117.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Uncharacterized protein MG259 (MG_259) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
 
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MTLYEFFLNQKLVYQSSPHFNGVFLTILEHYGFQFKTIDKLWKSKLLITSELTDKIKQQLKCYFIEKIPLPYLLGTIQLRKLTFKTKKGVFIPRIDSLALIASVNLKKIKTALDLCCGSGTLAIALKKKCDTLDVYGSDIDIQALKLAQQNALINNVSINWIEADWFDCFNKIKTPIDLIVTNPPYLKKTQLNKTLNYEPKHSLVFQNKNSYFAYKQLFNLLLTKRSIKQLIFECSLFQKERLLNLFSIFKSRPIFNFQKQFIGMKVDNQKLPVVDIKNTKTIKQLLKMGLAGIVNTDTQMGLISYSESTLDKIKQRALNKHYVSMFGLEELKKLPKKLQQIASYFWPGSYTFIKNNKSYRVPKNLGLLNLFNAIGRVFCTSANISNQKPYTKLSDYQNDSYWIKQPCFIIRSTSKVQSNNTPSLVYNLDTKQLVRTTAKQTKQFHKLITKHQLAI
tmhmm (0)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)
-----------XXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred
--HHHHHHHHHHH--------HHHHHHHHHH-----HHHHHH-------HHHHHHHHHHHHHHHH----HHHEEEEEEE--EEEEE---EE-----HHHHH---------EEEEE----HHHHHHHHHH----EEEEEE--HHHHHHHHHHHHH---EEEEEE-------HHH----EEEEE-----------HHH---HHHHH------HHHHHHHHHHHHHHH----EEEEEE---HHHHHHHHHHH--------------------------------HHHHHH-----EEE-----------HHHHHHHH---------EEEE-HHHHHH--HHHHHHHHHH----EEEEE--EEEE----HHHHHHHHHH--EEE-------------HHHHHHHHH-----EEEE-------------EEEE----EEEE-----HHHHHHHHHH-----
sam
--HHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHEE-------HHHHHHHHHHHHHHHHH---HEHHH--EEE--EEEEE----------HHHHHHHHH-----EEEE---HHHHHHHHHHHH----EEEEE---HHHHHHHHHHHHHH---EEEEE------------EEEEEEE--------------E---HEEEE-----HHHHHHHHHHHHHH-----EEEEEE---HHHHHHHHHHHH-----EEEEE------EEEEEEEE--HH-HHHHHH------EEEEE-----------HHHHHHHHHH---HHHHHHH-HHHHHH--HHHHHHHHH-----EEEEE----------HHHHHHHHHH-EEEE-------------HHHHHHHHHH-----EEEEE----------EEEEE----HHHHHHHHHHHHHHHHHHHHH---
jufo
--HHHHHHHHHH------HHHHHHHHHHHHHH-----HHHHH-------HHHHHHHHHHHHHHHH----------HH-----EEEEE--EEE-----HHHHH--------EEEEEE---HHHHHHHHHH---EEEEHHHHHHHHHHHHHHHHHHH---HH------------------EEEEE---------------------------HHHHHHHHHHHHHH-----EEEEEEEHHHHHHHHHHHHHH---------------------------------HHHHHH--------------HHHHHHHHHHHHH------EEEEEEHHHHHHHHHHHHHHHHH----EEEEEEE--------HHHHHHHHHH--EEEEE------------HHHHHHHHHH---EEEEEEE----------EEEEEE--EEEEE-----HHHHHHHHHH-----

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    22	    0.110
  max. Y    16	    0.124
  max. S    13	    0.213
  mean S     1-15   0.148
       D     1-15   0.136    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.136 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-289     alignment     5u0nA_310     1-308   0.721200   --
  290-456     alignment     6f87A_101     1-341   0.825300   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.03%)1E-1091-4561-456403100456ref|NP_072925.1|HemK family modification methylase [Mycoplasma genitalium G3...
1238993Mycoplasma pneumoniae M129-B71 (0.03%)4E-991-4541-45136854454ref|NP_110050.1|HemK family methylase [Mycoplasma pneumoniae M129] ref|YP_00...
861Fusobacterium ulcerans1 (0.03%)9E-6216-267108-36224428261ref|WP_008696524.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
997347Fusobacterium nucleatum subsp. animalis ATCC 511911 (0.03%)3E-5746-2673-23122928231gb|EGQ80257.1|protein-(glutamine-N5) methyltransferase [Fusobacterium nucl...
347257Mycoplasma agalactiae PG22 (0.05%)9E-4161-25425-22417428203ref|YP_001256872.1|protoporphirogen oxidase HEMK [Mycoplasma agalactiae PG2] re...
469617Fusobacterium ulcerans ATCC 491851 (0.03%)4E-6117-267109-36224227260ref|WP_005980799.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
525919Anaerococcus prevotii DSM 205481 (0.03%)1E-5826-25513-24423327236ref|YP_003152501.1|HemK family modification methylase [Anaerococcus prevotii DS...
478547Campylobacter jejuni subsp. jejuni CG84211 (0.03%)5E-4020-26710-25017227255ref|WP_002860037.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
1614Lactobacillus fructivorans1 (0.03%)2E-672-27110-28226326277ref|WP_010021940.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
245018butyrate-producing bacterium SSC/21 (0.03%)3E-671-2671-27326226277ref|YP_007790522.1|protein-(glutamine-N5) methyltransferase, release factor-spe...
658089Lachnospiraceae bacterium 5_1_63FAA2 (0.05%)3E-661-2671-27325926277ref|WP_009265462.1|(glutamine-N5) methyltransferase [Lachnospiraceae bacterium ...
411484Clostridium sp. SS2/11 (0.03%)2E-661-2671-27325926277ref|WP_008390548.1|hypothetical protein [Clostridium sp. SS2/1] gb|EDS22074.1| ...
525310Lactobacillus brevis subsp. gravesensis ATCC 273051 (0.03%)6E-642-2708-28225126280ref|WP_003553562.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
525327Lactobacillus hilgardii ATCC 82901 (0.03%)7E-632-2708-28224826280ref|WP_003559903.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
1032505Fusobacterium sp. OBRC11 (0.03%)1E-5920-267106-35723726257gb|EUB34981.1|protein-(glutamine-N5) methyltransferase, release factor-spe...
546275Fusobacterium periodonticum ATCC 336931 (0.03%)1E-5932-267115-35723726245ref|WP_005975817.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
393480Fusobacterium nucleatum subsp. polymorphum ATCC 109532 (0.05%)2E-5920-267106-35723626257ref|WP_005896111.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
999414Fusobacterium nucleatum subsp. animalis F04191 (0.03%)6E-5917-267103-35723526260ref|WP_005909557.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
851Fusobacterium nucleatum5 (0.12%)4E-5917-267103-35723526260ref|WP_008795847.1|N5-glutamine S-adenosyl-L-methionine-dependent methyltransfe...
416591Thermotoga lettingae TMO3 (0.07%)3E-571-2671-26522926272ref|YP_001470611.1|HemK family modification methylase [Thermotoga lettingae TMO...






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